Stem-loop sme-mir-745

Accession

MI0005143

Description

Schmidtea mediterranea sme-mir-745 precursor miRNA

Sequence

11946 reads, 228.0 reads per million, 28 experiments

auuaacucugugaugauACGCUCUUACCAGCUAGAAUGcugauaauuuaccacaUGCUGCCUGGUUAAGAGCUGUGUcaaacaccuuucaaac
.........(((.(((((((((((((((((.(((.(((.((.........))))).))).)))).))))))).))))))..))).........

Structure

auuaacucu   -a      -       -    C   A   c  aua 
         gug  ugauAC GCUCUUA CCAG UAG AUG ug   a
         |||  |||||| ||||||| |||| ||| ||| ||   u
         cac  acUGUG CGAGAAU GGUC GUC Uac ac   u
caaacuuuc   aa      U       U    C   G   -  cau 

Annotation confidence High

Genome context

gb|NNSW01000224.1|: 108928-109020 [+]

Mature sme-miR-745-5p

• Accession: MIMAT0012102
• Description: Schmidtea mediterranea sme-miR-745-5p mature miRNA
• Sequence: 18 - ACGCUCUUACCAGCUAGAAUG - 38
• Evidence: experimental ; Illumina [2-3]

Mature sme-miR-745-3p

• Accession: MIMAT0003977
• Description: Schmidtea mediterranea sme-miR-745-3p mature miRNA
• Sequence: 55 - UGCUGCCUGGUUAAGAGCUGUGU - 77
• Evidence: experimental ; cloned [1], Northern [1], 454 [2], Illumina [2]

References

1. PubMed ID: 16849698
   MicroRNAs from the Planarian Schmidtea mediterranea: a model system for stem cell biology
   "Palakodeti D, Smielewska M, Graveley BR"
   "RNA (2006) 12:1640-1649


2. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551


3. PubMed ID: 19553344
   Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
   "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
   "RNA (2009) 15:1483-1491