Stem-loop sme-mir-36c

Accession

MI0010802

Description

Schmidtea mediterranea sme-mir-36c precursor miRNA

Sequence

aauuucaacauaaauuagCGAUGAUUGUCCAACUGGUUUggugucgaguugaaaaaugcaUCACCGGGUAGACAUUCAUUcucuaaauuuaucgucaaucuc
.......(((((((((((.(((((.((((...(((((..(((((...(((....)))))))))))))...)))).))).)).)).))))))).)).......

Structure

aauuuca  -       -  C  -   U    CAA     UU     cga   g 
       ac auaaauu ag GA UGA UGUC   CUGGU  ggugu   guu a
       || ||||||| || || ||| ||||   |||||  |||||   |||  
       ug uauuuaa uc cU ACU ACAG   GGCCA  CUacg   uaa a
cucuaac  c       a  u  U   U    AUG     --     ---   a 

Annotation confidence Not enough data

Genome context

Contig3934: 37302-37403 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from sme-mir-36c

Mature sme-miR-36c-5p

• Accession: MIMAT0012158
• Description: Schmidtea mediterranea sme-miR-36c-5p mature miRNA
• Sequence: 19 - CGAUGAUUGUCCAACUGGUUU - 39
• Evidence: experimental ; Illumina [1-2]

Mature sme-miR-36c-3p

• Accession: MIMAT0011261
• Description: Schmidtea mediterranea sme-miR-36c-3p mature miRNA
• Sequence: 61 - UCACCGGGUAGACAUUCAUU - 80
• Evidence: experimental ; 454 [1], Illumina [1-2]

References

1. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551


2. PubMed ID: 19553344
   Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
   "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
   "RNA (2009) 15:1483-1491