Stem-loop sme-mir-1993

Accession

MI0010781

Description

Schmidtea mediterranea sme-mir-1993 precursor miRNA

Literature search

2 open access papers mention sme-mir-1993
(3 sentences)

Sequence

46739 reads, 872.0 reads per million, 28 experiments

uuaaccuucgauauguaauuGAUGAAUCAACAGUAUAAAAACGgaguacaacaaauauucgUAUUAUGCUGUUAUUCAUGAGUuacuauggauuuaucgucg
.......((.(((.((((((.((((((.((((((((((..(((((............))))).)))))))))))))))).))))))))).))..........

Structure

---uuaaccu  g   u      G      C          AA     guaca 
          uc aua guaauu AUGAAU AACAGUAUAA  ACGga     a
          || ||| |||||| |||||| ||||||||||  |||||      
          ag uau cauUGA UACUUA UUGUCGUAUU  Ugcuu     c
gcugcuauuu  g   -      G      -          -A     auaaa 

Annotation confidence Medium

Genome context

gb|NNSW01000027.1|: 2971584-2971685 [+]

Mature sme-miR-1993-5p

• Accession: MIMAT0012140
• Description: Schmidtea mediterranea sme-miR-1993-5p mature miRNA
• Sequence: 21 - GAUGAAUCAACAGUAUAAAAACG - 43
• Evidence: experimental ; 454 [1], Illumina [1-2]

Mature sme-miR-1993-3p

• Accession: MIMAT0011241
• Description: Schmidtea mediterranea sme-miR-1993-3p mature miRNA
• Sequence: 62 - UAUUAUGCUGUUAUUCAUGAGU - 83
• Evidence: experimental ; 454 [1], Illumina [1-2]

References

1. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551


2. PubMed ID: 19553344
   Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
   "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
   "RNA (2009) 15:1483-1491