Stem-loop sme-lin-4

Accession

MI0005125

Description

Schmidtea mediterranea sme-lin-4 precursor miRNA

Literature search

8 open access papers mention sme-lin-4
(34 sentences)

Sequence

11721206 reads, 206334.0 reads per million, 28 experiments

aucaguuauaaucUCCCUGAGACCUUCGACUGUGUUugaccauuaaauuaucagaaaugauugcACAGUCGAUGAUCAUAGGGUUaaaauagccgau
(((.(((((.....(((((.((.(.((((((((((.....((((...........))))...)))))))))).).)).))))).....))))).)))

Structure

   a     aaucU     A  C U          Uugac    aaau 
auc guuau     CCCUG GA C UCGACUGUGU     cauu    u
||| |||||     ||||| || | ||||||||||     ||||    a
uag cgaua     GGGAU CU G AGCUGACAcg     guaa    u
   c     aaaUU     A  A U          --uua    agac 

Annotation confidence High

Genome context

gb|NNSW01000076.1|: 2511113-2511209 [-]

Mature sme-lin-4-5p

• Accession: MIMAT0003956
• Description: Schmidtea mediterranea sme-lin-4-5p mature miRNA
• Sequence: 14 - UCCCUGAGACCUUCGACUGUGUU - 36
• Evidence: experimental ; cloned [1], Northern [1], 454 [2], Illumina [2]

Mature sme-lin-4-3p

• Accession: MIMAT0012089
• Description: Schmidtea mediterranea sme-lin-4-3p mature miRNA
• Sequence: 65 - ACAGUCGAUGAUCAUAGGGUU - 85
• Evidence: experimental ; 454 [2], Illumina [2-3]

References

1. PubMed ID: 16849698
   MicroRNAs from the Planarian Schmidtea mediterranea: a model system for stem cell biology
   "Palakodeti D, Smielewska M, Graveley BR"
   "RNA (2006) 12:1640-1649


2. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551


3. PubMed ID: 19553344
   Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
   "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
   "RNA (2009) 15:1483-1491