Stem-loop sme-mir-219

Accession

MI0005167

Description

Schmidtea mediterranea sme-mir-219 precursor miRNA

Literature search

2 open access papers mention sme-mir-219
(3 sentences)

Sequence

44450 reads, 866.0 reads per million, 28 experiments

cgguaauuuauugcUGAUUGUCCAUACGCAGUUCUCaaggucuagaaucgacgaauugccguuuaAGAAUUGCGAAUGGUCAUCAACaauaauugcug
((((((((.((((.((((.(.((((.(((((((((...(((................))).....))))))))).)))).))))).))))))))))))

Structure

        u    c    U U    A         --Caa   cuagaau 
cgguaauu auug UGAU G CCAU CGCAGUUCU     ggu       c
|||||||| |||| |||| | |||| |||||||||     |||        
gucguuaa uaaC ACUA C GGUA GCGUUAAGA     ccg       g
        -    A    - U    A         auuug   uuaagca 

Annotation confidence High

Genome context

gb|NNSW01000387.1|: 101902-101999 [+]

Mature sme-miR-219-5p

• Accession: MIMAT0004006
• Description: Schmidtea mediterranea sme-miR-219-5p mature miRNA
• Sequence: 15 - UGAUUGUCCAUACGCAGUUCUC - 36
• Evidence: experimental ; cloned [1], 454 [2], Illumina [2-3]

Mature sme-miR-219-3p

• Accession: MIMAT0012118
• Description: Schmidtea mediterranea sme-miR-219-3p mature miRNA
• Sequence: 66 - AGAAUUGCGAAUGGUCAUCAAC - 87
• Evidence: experimental ; 454 [2], Illumina [2-3]

References

1. PubMed ID: 16849698
   MicroRNAs from the Planarian Schmidtea mediterranea: a model system for stem cell biology
   "Palakodeti D, Smielewska M, Graveley BR"
   "RNA (2006) 12:1640-1649


2. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551


3. PubMed ID: 19553344
   Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
   "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
   "RNA (2009) 15:1483-1491