Stem-loop sme-mir-2171

Accession

MI0010814

Description

Schmidtea mediterranea sme-mir-2171 precursor miRNA

Sequence

154 reads, 3.0 reads per million, 27 experiments

gaaaacgcaacaguacaaauGUGAUGGAAAUCGCUAUUUCAaaugcucccuugagauuaugcagUGGCCGUUCAUGAUGUAAGGcauaauagaaa
......((.....((((.(((.(((((..((.((.(((((((........)))))))...)).))..))))))))..))))..))..........

Structure

----gaaaac  aacag    -a   U     AA  C  --U       aug 
          gc     uaca  auG GAUGG  AU GC   AUUUCAa   c
          ||     ||||  ||| |||||  || ||   |||||||    
          cG     AUGU  UAC UUGCC  Ug cg   uagaguu   u
aaagauaaua  ---GA    AG   -     GG  a  uau       ccc 

Annotation confidence Low

Genome context

gb|NNSW01000014.1|: 5227440-5227534 [+]

Mature sme-miR-2171-5p

• Accession: MIMAT0011271
• Description: Schmidtea mediterranea sme-miR-2171-5p mature miRNA
• Sequence: 21 - GUGAUGGAAAUCGCUAUUUCA - 41
• Evidence: experimental ; 454 [1], Illumina [1-2]

Mature sme-miR-2171-3p

• Accession: MIMAT0053631
• Description: Schmidtea mediterranea sme-miR-2171-3p mature miRNA
• Sequence: 65 - UGGCCGUUCAUGAUGUAAGG - 84
• Evidence: experimental ; 454 [1], Illumina [1-2]

References

1. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551


2. PubMed ID: 19553344
   Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
   "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
   "RNA (2009) 15:1483-1491