Stem-loop sme-mir-2201

Accession

MI0010952

Description

Schmidtea mediterranea sme-mir-2201 precursor miRNA

Sequence

49897 reads, 941.0 reads per million, 28 experiments

caugaugcugcucAAGUUACUGAAGAAGCUGAUGCUGACAAAGaaguauUAUCUGAAGAAGCUGGAGCAUCCGAAUagcuuuuuaau
...((((((.(...((((.((..(((...(((((((........))))))))))..)).))))).))))))................

Structure

-------------cau      g ucA    A  GA   AGC       GAC 
                gaugcu c   AGUU CU  AGA   UGAUGCU   A
                |||||| |   |||| ||  |||   |||||||    
                CUACGA G   UCGA GA  UCU   AUuauga   A
uaauuuuucgaUAAGC      G ---    A  AG   ---       aGA 

Annotation confidence Low

Genome context

gb|NNSW01000013.1|: 6375430-6375516 [+]

Mature sme-miR-2201-5p

• Accession: MIMAT0011423
• Description: Schmidtea mediterranea sme-miR-2201-5p mature miRNA
• Sequence: 14 - AAGUUACUGAAGAAGCUGAUGCUGACAAAG - 43
• Evidence: experimental ; Illumina [1]

Mature sme-miR-2201-3p

• Accession: MIMAT0011424
• Description: Schmidtea mediterranea sme-miR-2201-3p mature miRNA
• Sequence: 50 - UAUCUGAAGAAGCUGGAGCAUCCGAAU - 76
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19553344
   Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
   "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
   "RNA (2009) 15:1483-1491