Stem-loop sme-mir-96a

Accession

MI0010803

Description

Schmidtea mediterranea sme-mir-96a precursor miRNA

Literature search

2 open access papers mention sme-mir-96a
(2 sentences)

Sequence

54277 reads, 1057.0 reads per million, 28 experiments

cuucauuugaguauauaucgUUUGGCACUUAAGGAAUUGUcacuaguguucuuuuuaaaguucgguGACAAUACUAAAGAGUCAAGCguuucaacucgauucgcuuca
......((((((......((((((((.(((.((..(((((((((...(..(((....)))..)))))))))).)).))).)))))))).....)))))).........

Structure

---cuucau      auauau        A   A  GA         agu uu   u 
         uugagu      cgUUUGGC CUU AG  AUUGUcacu   g  cuu u
         ||||||      |||||||| ||| ||  |||||||||   |  |||  
         agcuca      gCGAACUG GAA UC  UAACAGugg   c  gaa u
acuucgcuu      -acuuu        A   A  -A         --- uu   a 

Annotation confidence Medium

Genome context

gb|NNSW01000022.1|: 4678443-4678550 [+]

Mature sme-miR-96a-5p

• Accession: MIMAT0011262
• Description: Schmidtea mediterranea sme-miR-96a-5p mature miRNA
• Sequence: 21 - UUUGGCACUUAAGGAAUUGU - 40
• Evidence: experimental ; 454 [1], Illumina [1-2]

Mature sme-miR-96a-3p

• Accession: MIMAT0012159
• Description: Schmidtea mediterranea sme-miR-96a-3p mature miRNA
• Sequence: 67 - GACAAUACUAAAGAGUCAAGC - 87
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551


2. PubMed ID: 19553344
   Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
   "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
   "RNA (2009) 15:1483-1491