Stem-loop sme-mir-2152

Accession

MI0010773

Description

Schmidtea mediterranea sme-mir-2152 precursor miRNA

Literature search

0 open access papers mention sme-mir-2152
(0 sentences)

Sequence

7474 reads, 134.0 reads per million, 28 experiments

cuuauucucaaacuuuaaAUGGGUUCGAAGUAUGUCUCUcuuuauuggagauauauaucgaauacgaaUGACUAGUGAGCCAUUUUU
......((((............((((((.(((((((((.(......)))))))))).))))))............))))........

Structure

--cuuauu    aacuuuaaAUGG      A         U uu 
        cuca            GUUCGA GUAUGUCUC c  u
        ||||            |||||| ||||||||| |   
        GAGU            uaagcu uauauagag g  a
UUUUUACC    GAUCAGUaagca      a         - uu 

Annotation confidence Low

Genome context

gb|NNSW01000428.1|: 30039-30125 [-]

Mature sme-miR-2152-5p

• Accession: MIMAT0011233
• Description: Schmidtea mediterranea sme-miR-2152-5p mature miRNA
• Sequence: 19 - AUGGGUUCGAAGUAUGUCUCU - 39
• Evidence: experimental ; 454 [1], Illumina [1]

Mature sme-miR-2152-3p

• Accession: MIMAT0053626
• Description: Schmidtea mediterranea sme-miR-2152-3p mature miRNA
• Sequence: 69 - UGACUAGUGAGCCAUUUUU - 87
• Evidence: experimental ; 454 [1], Illumina [1]

References

1. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551