Stem-loop sme-mir-2170

Accession

MI0010811

Description

Schmidtea mediterranea sme-mir-2170 precursor miRNA

Sequence

596 reads, 11.0 reads per million, 28 experiments

auaaauggcauuauauuuucucuacuaaauuucacuaugaauuuaagguauucACAGUGAAAUUUUGUAGAGAaaauauaauaaauugcuugu
......(((((((((((((((((((.((((((((((.(((((.......))))).)))))))))).))))))))))))))).....))))...

Structure

auaaau    -----               u          a     uu 
      ggca     uuauauuuucucuac aaauuucacu ugaau  a
      ||||     ||||||||||||||| |||||||||| |||||  a
      ucgu     aauauaaaAGAGAUG UUUAAAGUGA Acuua  g
---ugu    uaaau               U          C     ug 

Annotation confidence Not enough data

Genome context

gb|NNSW01000070.1|: 1655510-1655602 [-]

Mature sme-miR-2170-3p

• Accession: MIMAT0011269
• Description: Schmidtea mediterranea sme-miR-2170-3p mature miRNA
• Sequence: 54 - ACAGUGAAAUUUUGUAGAGA - 73
• Evidence: experimental ; 454 [1], Illumina [1]

References

1. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551