Stem-loop sme-mir-2147c

Accession

MI0010813

Description

Schmidtea mediterranea sme-mir-2147c precursor miRNA

Sequence

3984 reads, 76.0 reads per million, 28 experiments

uuguuuugcuguaauaacggCGGAAAACUCGCUCGUGCCAUCGUcgucuucacgaugucacggcagguguucccacguuaaucccaauuuuccuca
..............(((((..((((.(((.((.((((.((((((.(....))))))).)))))).))).))))..)))))................

Structure

--uuguuuugcuguaa     gC    A   C  U    C      c u 
                uaacg  GGAA ACU GC CGUG CAUCGU g c
                |||||  |||| ||| || |||| |||||| |  
                auugc  ccuu ugg cg gcac guagca c u
acuccuuuuaacccua     ac    g   a  -    u      - u 

Annotation confidence Not enough data

Genome context

gb|NNSW01000013.1|: 6028525-6028620 [-]

Mature sme-miR-2147c-5p

• Accession: MIMAT0011270
• Description: Schmidtea mediterranea sme-miR-2147c-5p mature miRNA
• Sequence: 21 - CGGAAAACUCGCUCGUGCCAUCGU - 44
• Evidence: experimental ; 454 [1], Illumina [1]

References

1. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551