Stem-loop sme-mir-2147b

Accession

MI0010806

Description

Schmidtea mediterranea sme-mir-2147b precursor miRNA

Sequence

737 reads, 14.0 reads per million, 28 experiments

ccuucuuuggauacuaacggCGGAAAACUCGCACGUGuccucgucaacuucacgauuucacggcgaguguUCCCACGUUAUUUCCAAUUCUCGaca
......(((((...(((((..((((.((((((.((((...((((.......))))...)))))))))).))))..)))))..))))).........

Structure

---ccuucu     uac     gC    A      A    ucc    ca 
         uugga   uaacg  GGAA ACUCGC CGUG   ucgu  a
         |||||   |||||  |||| |||||| ||||   ||||  c
         AACCU   AUUGC  CCUu ugagcg gcac   agca  u
acaGCUCUU     -UU     AC    g      -    uuu    cu 

Annotation confidence Low

Genome context

gb|NNSW01000036.1|: 3155861-3155956 [+]

Mature sme-miR-2147b-5p

• Accession: MIMAT0011265
• Description: Schmidtea mediterranea sme-miR-2147b-5p mature miRNA
• Sequence: 21 - CGGAAAACUCGCACGUG - 37
• Evidence: experimental ; 454 [1], Illumina [1]

Mature sme-miR-2147b-3p

• Accession: MIMAT0053630
• Description: Schmidtea mediterranea sme-miR-2147b-3p mature miRNA
• Sequence: 71 - UCCCACGUUAUUUCCAAUUCUCG - 93
• Evidence: experimental ; 454 [1], Illumina [1]

References

1. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551