Stem-loop sme-mir-2180

Accession

MI0010829

Description

Schmidtea mediterranea sme-mir-2180 precursor miRNA

Sequence

504 reads, 10.0 reads per million, 28 experiments

auauauauauauauauaccaacccucaucccauacucauggaaaaaUGGAAUGUGAUAAGGUGCUUgaauuauacuugaaauauug
((((((....))))))..(((((((.(((.(((.(.(((......)))).))).))).))).).)))...................

Structure

-auauauauauauauauac   - -   c   c   a u   gg 
                   caa c ccu auc cau c cau  a
                   ||| | ||| ||| ||| | |||   
                   gUU G GGA UAG GUA G GUa  a
guuauaaaguucauauuaa   C U   A   U   A -   aa 

Annotation confidence Not enough data

Genome context

gb|NNSW01000240.1|: 98923-99008 [-]

Mature sme-miR-2180-3p

• Accession: MIMAT0011283
• Description: Schmidtea mediterranea sme-miR-2180-3p mature miRNA
• Sequence: 47 - UGGAAUGUGAUAAGGUGCUU - 66
• Evidence: experimental ; 454 [1], Illumina [1]

References

1. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551