Stem-loop sme-mir-2155

Accession

MI0010831

Description

Schmidtea mediterranea sme-mir-2155 precursor miRNA

Sequence

uauuugauguaaagugcaucaggauaaguguauagcaguguuaauuuGACACUGUUUUACACUUACCCGAugcucagagaaauuugaaug
...............(((((.((.((((((((.((((((((((...)))))))))).)))))))))).)))))(((((....)))))...

Structure

--uauuugauguaaagu     a  a        u          a 
                 gcauc gg uaagugua agcaguguua  
                 ||||| || |||||||| |||||||||| u
                 cguAG CC AUUCACAU UUGUCACAGu  
guaaguuuaaagagacu     C  -        U          u 

Annotation confidence Not enough data

Genome context

Contig152: 180592-180681 [-]

Mature sme-miR-2155

• Accession: MIMAT0011285
• Description: Schmidtea mediterranea sme-miR-2155 mature miRNA
• Sequence: 48 - GACACUGUUUUACACUUACCCGA - 70
• Evidence: experimental ; 454 [1], Illumina [1]

References

1. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551