Stem-loop sme-mir-2153

Accession

MI0010774

Description

Schmidtea mediterranea sme-mir-2153 precursor miRNA

Sequence

uaaauuacggauuuugauuaggUAGGCAUAGUCUGUUGGUUACUucuaugaaauugaauuugaucaauaaaucacccuugaccauggacgcgacccuaccuuuuauugaaugaaauauuucg
............((((((.(((((((....((((((.(((((......(((.(((((......)))))...)))....))))))))))).....)))))))...))))))............

Structure

uaaauuacggau      --u       -CAUA      U     CUucua   --a     au 
            uuugau   aggUAGG     GUCUGU GGUUA      uga   auuga  u
            ||||||   |||||||     |||||| |||||      |||   |||||   
            aaguua   uccaucc     caggua ccagu      acu   uaacu  u
gcuuuauaaagu      uuu       cagcg      -     --uccc   aaa     ag 

Annotation confidence Not enough data

Genome context

Contig2809: 40729-40850 [+]

Mature sme-miR-2153

• Accession: MIMAT0011234
• Description: Schmidtea mediterranea sme-miR-2153 mature miRNA
• Sequence: 23 - UAGGCAUAGUCUGUUGGUUACU - 44
• Evidence: experimental ; 454 [1], Illumina [1]

References

1. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551