Stem-loop sme-mir-2153

Accession

MI0010774

Description

Schmidtea mediterranea sme-mir-2153 precursor miRNA

Sequence

30310 reads, 590.0 reads per million, 28 experiments

uaaauuacggauuuugauuaggUAGGCAUAGUCUGUUGGUUACUucuaugaaauugaauuugaucaauAAAUCACCCUUGACCAUGGACgcgacccuaccuuuuauugaaugaaauauuucg
............((((((.(((((((....((((((.(((((......(((.(((((......)))))...)))....))))))))))).....)))))))...))))))............

Structure

uaaauuacggau      --u       -CAUA      U     CUucua   --a     au 
            uuugau   aggUAGG     GUCUGU GGUUA      uga   auuga  u
            ||||||   |||||||     |||||| |||||      |||   |||||   
            aaguua   uccaucc     CAGGUA CCAGU      ACU   uaacu  u
gcuuuauaaagu      uuu       cagcg      -     --UCCC   AAA     ag 

Annotation confidence Low

Genome context

gb|NNSW01000077.1|: 813960-814081 [-]

Mature sme-miR-2153-5p

• Accession: MIMAT0011234
• Description: Schmidtea mediterranea sme-miR-2153-5p mature miRNA
• Sequence: 23 - UAGGCAUAGUCUGUUGGUUACU - 44
• Evidence: experimental ; 454 [1], Illumina [1]

Mature sme-miR-2153-3p

• Accession: MIMAT0053627
• Description: Schmidtea mediterranea sme-miR-2153-3p mature miRNA
• Sequence: 69 - AAAUCACCCUUGACCAUGGAC - 89
• Evidence: experimental ; 454 [1], Illumina [1]

References

1. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551