Stem-loop sme-mir-2166

Accession

MI0010804

Description

Schmidtea mediterranea sme-mir-2166 precursor miRNA

Sequence

auaugaaaucuauuuuucucuagaauaaaacagauaaccaaucauguugcaguugaaucugaUUGGUCACUUGCUUUAUUCACUCauaaaucuaaauuaaauagc
....((((......))))....(((((((.(((...((((((((.(((.......))).))))))))...))).)))))))........................

Structure

--auaugaaaucuauuuuucucua       a   aua        u   gc 
                        gaauaaa cag   accaauca guu  a
                        ||||||| |||   |||||||| |||  g
                        CUUAUUU GUU   UGGUUagu uaa  u
cgauaaauuaaaucuaaauaCUCA       C   CAC        c   gu 

Annotation confidence Not enough data

Genome context

Contig110: 125557-125661 [+]

Mature sme-miR-2166

• Accession: MIMAT0011263
• Description: Schmidtea mediterranea sme-miR-2166 mature miRNA
• Sequence: 63 - UUGGUCACUUGCUUUAUUCACUC - 85
• Evidence: experimental ; 454 [1], Illumina [1]

References

1. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551