Stem-loop sme-mir-2166

Accession

MI0010804

Description

Schmidtea mediterranea sme-mir-2166 precursor miRNA

Sequence

319 reads, 6.0 reads per million, 28 experiments

auaugaaaucuauuuuucucUAGAAUAAAACAGAUAACCAAUCauguugcaguugaaucugaUUGGUCACUUGCUUUAUUCACUCauaaaucuaaauuaaauagc
....((((......))))....(((((((.(((...((((((((.(((.......))).))))))))...))).)))))))........................

Structure

--auaugaaaucuauuuuucucUA       A   AUA        u   gc 
                        GAAUAAA CAG   ACCAAUCa guu  a
                        ||||||| |||   |||||||| |||  g
                        CUUAUUU GUU   UGGUUagu uaa  u
cgauaaauuaaaucuaaauaCUCA       C   CAC        c   gu 

Annotation confidence High

Genome context

gb|NNSW01000792.1|: 101554-101658 [-]

Mature sme-miR-2166-5p

• Accession: MIMAT0053628
• Description: Schmidtea mediterranea sme-miR-2166-5p mature miRNA
• Sequence: 21 - UAGAAUAAAACAGAUAACCAAUC - 43
• Evidence: experimental ; 454 [1], Illumina [1]

Mature sme-miR-2166-3p

• Accession: MIMAT0011263
• Description: Schmidtea mediterranea sme-miR-2166-3p mature miRNA
• Sequence: 63 - UUGGUCACUUGCUUUAUUCACUC - 85
• Evidence: experimental ; 454 [1], Illumina [1]

References

1. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551