Stem-loop sme-mir-2175

Accession

MI0010820

Description

Schmidtea mediterranea sme-mir-2175 precursor miRNA

Sequence

cuauugguagccaugauguuauuugcaauaaaauaucaguaaaaugacauuacuaagaauuuuauuuuUACUGAAUGUCUUUUUGCAAAUUGAcaaugcuacuuggcccauua
.....((((((.((..((((((((((((.((.(((((((((((((((.(((......))).))).)))))))).)))).)).))))))).)))))))))))))..........

Structure

-----cuauu      c  ga     -       u  a    -        -   c   ac 
          gguagc au  uguua uuugcaa aa auau caguaaaa uga auu  u
          |||||| ||  ||||| ||||||| || |||| |||||||| ||| |||   
          ucaucg ua  acAGU AAACGUU UU UGUA GUCAUuuu auu uaa  a
auuacccggu      -  --     U       U  C    A        u   u   ga 

Annotation confidence Not enough data

Genome context

Contig5899: 29810-29922 [-]

Mature sme-miR-2175

• Accession: MIMAT0011276
• Description: Schmidtea mediterranea sme-miR-2175 mature miRNA
• Sequence: 69 - UACUGAAUGUCUUUUUGCAAAUUGA - 93
• Evidence: experimental ; 454 [1], Illumina [1]

References

1. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551