Stem-loop sme-mir-2147a

Accession

MI0010770

Description

Schmidtea mediterranea sme-mir-2147a precursor miRNA

Sequence

1030 reads, 21.0 reads per million, 28 experiments

ucuucuuuggaugccaacggCGGAAGACUCGCACGUGACauugcuaauuuuuuccauuucacugcgaguguucccgcguugauuccaauucucauca
......(((((...(((((..((((.(((((((.((((....................))))))))))).))))..)))))..))))).........

Structure

---ucuucu     ugc     gC    G       C    Cauugcuaa 
         uugga   caacg  GGAA ACUCGCA GUGA         u
         |||||   |||||  |||| ||||||| ||||          
         aaccu   guugc  ccuu ugagcgu cacu         u
acuacucuu     -ua     gc    g       -    uuaccuuuu 

Annotation confidence Not enough data

Genome context

gb|NNSW01001809.1|: 108489-108585 [+]

Mature sme-miR-2147a-5p

• Accession: MIMAT0011230
• Description: Schmidtea mediterranea sme-miR-2147a-5p mature miRNA
• Sequence: 21 - CGGAAGACUCGCACGUGAC - 39
• Evidence: experimental ; 454 [1], Illumina [1]

References

1. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551