Stem-loop sme-mir-2167

Accession

MI0010805

Description

Schmidtea mediterranea sme-mir-2167 precursor miRNA

Sequence

503 reads, 9.0 reads per million, 27 experiments

ugugaaugcaauucuaucuuUGAAAGACAAGUCUUAUACAUUCUUagugucaaacauccaagUGUGUUAAGCUGGUCUUUCAGAgcaugaauucguuaaucguc
....((((.(((((...(((((((((((.((.((((.((((.(((.((((...))))..))).)))))))))).)))))))))))...))))))))).......

Structure

---ugug    c     uau           A  U    U    U   -a    c 
       aaug aauuc   cuuUGAAAGAC AG CUUA ACAU CUU  gugu  
       |||| |||||   ||||||||||| || |||| |||| |||  |||| a
       uugc uuaag   gAGACUUUCUG UC GAAU UGUG gaa  uaca  
cugcuaa    -     uac           G  -    -    U   cc    a 

Annotation confidence High

Genome context

gb|NNSW01000025.1|: 5887488-5887591 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from sme-mir-2167

Mature sme-miR-2167-5p

• Accession: MIMAT0053629
• Description: Schmidtea mediterranea sme-miR-2167-5p mature miRNA
• Sequence: 21 - UGAAAGACAAGUCUUAUACAUUCUU - 45
• Evidence: experimental ; 454 [1], Illumina [1]

Mature sme-miR-2167-3p

• Accession: MIMAT0011264
• Description: Schmidtea mediterranea sme-miR-2167-3p mature miRNA
• Sequence: 63 - UGUGUUAAGCUGGUCUUUCAGA - 84
• Evidence: experimental ; 454 [1], Illumina [1]

References

1. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551