Stem-loop sme-let-7d

Accession

MI0010765

Description

Schmidtea mediterranea sme-let-7d precursor miRNA

Literature search

5 open access papers mention sme-let-7d
(23 sentences)

Sequence

45015 reads, 816.0 reads per million, 28 experiments

cuuccuauauucauuuuacuAGAGGUAGUGAUUCAAAAAGUUaauuuaacauuuugacuUUUUGAAUUAUUAUCUUUGAuaaaugauugaaagacauca
..........((((((...(((((((((((((((((((((((((.........)))))))))))))))))))))))))..)))))).............

Structure

---cuuccuauau      uac                         uuu 
             ucauuu   uAGAGGUAGUGAUUCAAAAAGUUaa   a
             ||||||   |||||||||||||||||||||||||   a
             aguaaa   GUUUCUAUUAUUAAGUUUUucaguu   c
acuacagaaaguu      -uA                         uua 

Annotation confidence Medium

Genome context

gb|NNSW01000007.1|: 6243454-6243552 [+]

Mature sme-let-7d-5p

• Accession: MIMAT0011225
• Description: Schmidtea mediterranea sme-let-7d-5p mature miRNA
• Sequence: 21 - AGAGGUAGUGAUUCAAAAAGUU - 42
• Evidence: experimental ; 454 [1], Illumina [1]

Mature sme-let-7d-3p

• Accession: MIMAT0053624
• Description: Schmidtea mediterranea sme-let-7d-3p mature miRNA
• Sequence: 60 - UUUUGAAUUAUUAUCUUUGA - 79
• Evidence: experimental ; 454 [1], Illumina [1]

References

1. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551