Stem-loop sme-mir-2178

Accession

MI0010826

Description

Schmidtea mediterranea sme-mir-2178 precursor miRNA

Sequence

224 reads, 4.0 reads per million, 27 experiments

uacgagacauuucaucauugcaacauuucaucauuauagcaauucaucaaugcacauucuaUAAUGACGAAAUGUCUCAaugaugaaaugucucaauga
...(((((((((((((((((..(((((((.(((((((((.(((.((....))...)))))))))))).)))))))..))))))))))))))))).....

Structure

--uac                 ca       a         c   --u  u 
     gagacauuucaucauug  acauuuc ucauuauag aau   ca c
     |||||||||||||||||  ||||||| ||||||||| |||   ||  
     cucuguaaaguaguaAC  UGUAAAG AGUAAUauc uua   gu a
aguaa                 UC       C         -   cac  a 

Annotation confidence Not enough data

Genome context

gb|NNSW01001039.1|: 68765-68863 [-]

Mature sme-miR-2178-3p

• Accession: MIMAT0011280
• Description: Schmidtea mediterranea sme-miR-2178-3p mature miRNA
• Sequence: 62 - UAAUGACGAAAUGUCUCA - 79
• Evidence: experimental ; 454 [1], Illumina [1]

References

1. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551