Stem-loop sme-mir-2181

Accession

MI0010830

Description

Schmidtea mediterranea sme-mir-2181 precursor miRNA

Sequence

99 reads, 2.0 reads per million, 26 experiments

ucaacuauucgauuuugucaUAUGCUGUUAAUUAGCGAUUGGUUugaaagaguuucuuuaaccaaucauaauucacagcacuuguuuaauaucgugagccauca
.........((((.(((.((..((((((.(((((..((((((((..(((((...))))))))))))).))))).))))))..))..))).))))..........

Structure

-ucaacuauu    u   -u  UA      U     GC        ug     g 
          cgau uug  ca  UGCUGU AAUUA  GAUUGGUU  aaaga  
          |||| |||  ||  |||||| |||||  ||||||||  ||||| u
          gcua aau  gu  acgaca uuaau  cuaaccaa  uuucu  
acuaccgagu    u   uu  uc      c     -a        --     u 

Annotation confidence Not enough data

Genome context

gb|NNSW01000269.1|: 293335-293438 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from sme-mir-2181

Mature sme-miR-2181-5p

• Accession: MIMAT0011284
• Description: Schmidtea mediterranea sme-miR-2181-5p mature miRNA
• Sequence: 21 - UAUGCUGUUAAUUAGCGAUUGGUU - 44
• Evidence: experimental ; 454 [1], Illumina [1]

References

1. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551