Stem-loop sme-mir-2150

Accession

MI0010771

Description

Schmidtea mediterranea sme-mir-2150 precursor miRNA

Sequence

ucaaaucggacuucucuauuCGGUUACGUGAUUAUUAGGGGcagcggcuucgcugucuggugaacugucacuagcaagaaguuccuuaguagucaugugaccucaugaccgaaugcaauuucuuc
.....((((.....((.....((((((((((((((((((((.....(((((..((.(((((((....))))))))).)))))))))))))))))))))))))....)))))).............

Structure

--------ucaaa    acuuc  uauuC                    cagcg     gc  u       a 
             ucgg     uc     GGUUACGUGAUUAUUAGGGG     gcuuc  ug cugguga c
             ||||     ||     ||||||||||||||||||||     |||||  || |||||||  
             agcc     ag     ccaguguacugaugauuccu     ugaag  ac gaucacu u
cuucuuuaacgua    -----  -uacu                    -----     -a  -       g 

Annotation confidence Not enough data

Genome context

Contig127: 89634-89758 [-]

Mature sme-miR-2150

• Accession: MIMAT0011231
• Description: Schmidtea mediterranea sme-miR-2150 mature miRNA
• Sequence: 21 - CGGUUACGUGAUUAUUAGGGG - 41
• Evidence: experimental ; 454 [1], Illumina [1]

References

1. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551