Stem-loop sme-mir-2150

Accession

MI0010771

Description

Schmidtea mediterranea sme-mir-2150 precursor miRNA

Sequence

3556 reads, 67.0 reads per million, 28 experiments

ucaaaucggacuucucuauuCGGUUACGUGAUUAUUAGGGGcagcggcuucgcugucuggugaacugucacuagcaagaagUUCCUUAGUAGUCAUGUGACCUcaugaccgaaugcaauuucuuc
.....((((.....((.....((((((((((((((((((((.....(((((..((.(((((((....))))))))).)))))))))))))))))))))))))....)))))).............

Structure

--------ucaaa    acuuc  uauuC                    cagcg     gc  u       a 
             ucgg     uc     GGUUACGUGAUUAUUAGGGG     gcuuc  ug cugguga c
             ||||     ||     ||||||||||||||||||||     |||||  || |||||||  
             agcc     ag     CCAGUGUACUGAUGAUUCCU     Ugaag  ac gaucacu u
cuucuuuaacgua    -----  -uacU                    -----     -a  -       g 

Annotation confidence Medium

Genome context

gb|NNSW01000010.1|: 8121427-8121551 [+]

Mature sme-miR-2150-5p

• Accession: MIMAT0011231
• Description: Schmidtea mediterranea sme-miR-2150-5p mature miRNA
• Sequence: 21 - CGGUUACGUGAUUAUUAGGGG - 41
• Evidence: experimental ; 454 [1], Illumina [1]

Mature sme-miR-2150-3p

• Accession: MIMAT0053625
• Description: Schmidtea mediterranea sme-miR-2150-3p mature miRNA
• Sequence: 82 - UUCCUUAGUAGUCAUGUGACCU - 103
• Evidence: experimental ; 454 [1], Illumina [1]

References

1. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551