Stem-loop sme-mir-2176

Accession

MI0010823

Description

Schmidtea mediterranea sme-mir-2176 precursor miRNA

Sequence

19 reads, 1.0 reads per million, 14 experiments

ugaucaaaagcaaaaccuuugugaaucggauuguucuucaguuaAGAACAUUCUGAUUCACAAagguuuugcuucuuaucaca
((((...(((((((((((((((((((((((.(((((((.....))))))).)))))))))))))))))))))))...))))..

Structure

--    caa                       u       c 
  ugau   aagcaaaaccuuugugaaucgga uguucuu a
  ||||   ||||||||||||||||||||||| ||||||| g
  acua   uucguuuuggaAACACUUAGUCU ACAAGAa u
ac    uuc                       U       u 

Annotation confidence Not enough data

Genome context

gb|NNSW01000040.1|: 1330711-1330793 [-]

Mature sme-miR-2176-3p

• Accession: MIMAT0011278
• Description: Schmidtea mediterranea sme-miR-2176-3p mature miRNA
• Sequence: 45 - AGAACAUUCUGAUUCACAA - 63
• Evidence: experimental ; 454 [1], Illumina [1]

References

1. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551