Stem-loop sme-mir-749

Accession

MI0005175

Description

Schmidtea mediterranea sme-mir-749 precursor miRNA

Literature search

1 open access papers mention sme-mir-749
(1 sentences)

Sequence

6916 reads, 126.0 reads per million, 28 experiments

aucGCUGGGAUGAGCCUCGGUGGUccggggugcaggcuucaaaccuguagucgguugacaccgaagugguUCGAUUCCACCUUUCCAGCgau
((((((((((((((((((((((..((((..((((((.......)))))).))))....))))))...)))))).........))))))))))

Structure

          ---------      ---      --GU    gg      cu 
aucGCUGGGA         UGAGCC   UCGGUG    ccgg  ugcagg  u
||||||||||         ||||||   ||||||    ||||  ||||||  c
uagCGACCUU         GCUugg   agccac    ggcu  augucc  a
          UCCACCUUA      uga      aguu    -g      aa 

Annotation confidence Medium

Genome context

gb|NNSW01000040.1|: 4725804-4725895 [+]

Mature sme-miR-749-5p

• Accession: MIMAT0004016
• Description: Schmidtea mediterranea sme-miR-749-5p mature miRNA
• Sequence: 4 - GCUGGGAUGAGCCUCGGUGGU - 24
• Evidence: experimental ; cloned [1], 454 [2], Illumina [2]

Mature sme-miR-749-3p

• Accession: MIMAT0053621
• Description: Schmidtea mediterranea sme-miR-749-3p mature miRNA
• Sequence: 71 - UCGAUUCCACCUUUCCAGC - 89
• Evidence: experimental ; cloned [1], 454 [2], Illumina [2]

References

1. PubMed ID: 16849698
   MicroRNAs from the Planarian Schmidtea mediterranea: a model system for stem cell biology
   "Palakodeti D, Smielewska M, Graveley BR"
   "RNA (2006) 12:1640-1649


2. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551