Stem-loop sme-mir-2174

Accession

MI0010819

Description

Schmidtea mediterranea sme-mir-2174 precursor miRNA

Sequence

256 reads, 5.0 reads per million, 27 experiments

ucuuuggaacguUAACAUCGGAAAACCCGCAuugcguuauugucaaccucacaauuucgcuguGAGUGUUCCCAUGUUAgcucccauuuucga
.....(((..((((((((.((((.((.((((..(((..(((((.......)))))..))))))).)).)))).))))))))))).........

Structure

----ucuuu   ac        C    A  C    uu   uu     ca 
         gga  guUAACAU GGAA AC CGCA  gcg  auugu  a
         |||  |||||||| |||| || ||||  |||  |||||  c
         ccu  cgAUUGUA CCUU UG Gugu  cgc  uaaca  c
agcuuuuac   --        C    G  A    --   uu     cu 

Annotation confidence Medium

Genome context

gb|NNSW01000137.1|: 486510-486602 [+]

Mature sme-miR-2174-5p

• Accession: MIMAT0053632
• Description: Schmidtea mediterranea sme-miR-2174-5p mature miRNA
• Sequence: 13 - UAACAUCGGAAAACCCGCA - 31
• Evidence: experimental ; 454 [1], Illumina [1]

Mature sme-miR-2174-3p

• Accession: MIMAT0011275
• Description: Schmidtea mediterranea sme-miR-2174-3p mature miRNA
• Sequence: 64 - GAGUGUUCCCAUGUUA - 79
• Evidence: experimental ; 454 [1], Illumina [1]

References

1. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551