Stem-loop sme-mir-753a

Accession

MI0005179

Description

Schmidtea mediterranea sme-mir-753a precursor miRNA

Sequence

25688 reads, 488.0 reads per million, 28 experiments

uaaaguauauuuuaGAGCUUGGAUUGUGAUCUCAUauauuuaUGAGAUCAUUAUUCAAGCUCUUAaauaauacuuuu
.(((((((((((.(((((((((((.(((((((((((....))))))))))).))))))))))).)))).))))))).

Structure

u       -    u           U           u 
 aaaguau auuu aGAGCUUGGAU GUGAUCUCAUa a
 ||||||| |||| ||||||||||| |||||||||||  
 uuucaua uaaA UCUCGAACUUA UACUAGAGUau u
u       a    U           U           u 

Annotation confidence High

Genome context

gb|NNSW01000319.1|: 89904-89980 [+]

Mature sme-miR-753a-5p

• Accession: MIMAT0004020
• Description: Schmidtea mediterranea sme-miR-753a-5p mature miRNA
• Sequence: 15 - GAGCUUGGAUUGUGAUCUCAU - 35
• Evidence: experimental ; cloned [1], 454 [2], Illumina [2]

Mature sme-miR-753a-3p

• Accession: MIMAT0053622
• Description: Schmidtea mediterranea sme-miR-753a-3p mature miRNA
• Sequence: 43 - UGAGAUCAUUAUUCAAGCUCUUA - 65
• Evidence: experimental ; cloned [1], 454 [2], Illumina [2]

References

1. PubMed ID: 16849698
   MicroRNAs from the Planarian Schmidtea mediterranea: a model system for stem cell biology
   "Palakodeti D, Smielewska M, Graveley BR"
   "RNA (2006) 12:1640-1649


2. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551