Stem-loop sme-mir-753c

Accession

MI0010822

Description

Schmidtea mediterranea sme-mir-753c precursor miRNA

Sequence

21576 reads, 413.0 reads per million, 28 experiments

uuuuaauaaaguauauuuaaaAGCUUGGAUUGUGAUCUCAUAUauuuaUGAGAUCAUUAUUCAAGCUCUUAaauaauacuuuucaucaac
.......(((((((((((((.(((((((((.(((((((((((....))))))))))).))))))))).)))))).)))))))........

Structure

-uuuuaau       -      a         U           U 
        aaaguau auuuaa AGCUUGGAU GUGAUCUCAUA a
        ||||||| |||||| ||||||||| |||||||||||  
        uuucaua uaaAUU UCGAACUUA UACUAGAGUau u
caacuacu       a      C         U           u 

Annotation confidence Medium

Genome context

gb|NNSW01000196.1|: 95513-95602 [-]

Mature sme-miR-753c-5p

• Accession: MIMAT0011277
• Description: Schmidtea mediterranea sme-miR-753c-5p mature miRNA
• Sequence: 22 - AGCUUGGAUUGUGAUCUCAUAU - 43
• Evidence: experimental ; 454 [1], Illumina [1]

Mature sme-miR-753c-3p

• Accession: MIMAT0053633
• Description: Schmidtea mediterranea sme-miR-753c-3p mature miRNA
• Sequence: 49 - UGAGAUCAUUAUUCAAGCUCUUA - 71
• Evidence: experimental ; 454 [1], Illumina [1]

References

1. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551