Stem-loop sme-mir-2147b

Accession

MI0010806

Description

Schmidtea mediterranea sme-mir-2147b precursor miRNA

Gene family

MIPF0000751; mir-2147

Sequence

ccuucuuuggauacuaacggCGGAAAACUCGCACGUGuccucgucaacuucacgauuucacggcgaguguucccacguuauuuccaauucucgaca
......(((((...(((((..((((.((((((.((((...((((.......))))...)))))))))).))))..)))))..))))).........

Structure

---ccuucu     uac     gC    A      A    ucc    ca 
         uugga   uaacg  GGAA ACUCGC CGUG   ucgu  a
         |||||   |||||  |||| |||||| ||||   ||||  c
         aaccu   auugc  ccuu ugagcg gcac   agca  u
acagcucuu     -uu     ac    g      -    uuu    cu 

Annotation confidence Not enough data

Genome context

Contig348: 151427-151522 [+]

Mature sme-miR-2147b

• Accession: MIMAT0011265
• Description: Schmidtea mediterranea sme-miR-2147b mature miRNA
• Sequence: 21 - CGGAAAACUCGCACGUG - 37
• Evidence: experimental ; 454 [1], Illumina [1]

References

1. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551