miRBase entry: dre-mir-2187

Stem-loop dre-mir-2187


Accession
MI0010839
Description
Danio rerio dre-mir-2187 precursor miRNA
Gene family
MIPF0001770; mir-2187

Literature search
1 open access papers mention dre-mir-2187
(1 sentences)

Sequence

26 reads, 12 reads per million, 4 experiments
ucugaauugaugauucuggcuUUAAUUAGUAUAGCCUGUUUUAgugaucacaucaauucuUUACAGGCUAUGCUAAUCUAUGccagaauuagcaaugcaugugg
..((.((((.((((((((((.(..(((((((((((((((.....((((...)))).......)))))))))))))))..).)))))))))).)))).)).....

Structure
---uc  a    a          u UA               --UUUAg    c 
     ug auug ugauucuggc U  AUUAGUAUAGCCUGU       ugau  
     || |||| |||||||||| |  |||||||||||||||       |||| a
     ac uaac auuaagaccG A  UAAUCGUAUCGGACA       acua  
ggugu  g    g          U UC               UUucuua    c 


Annotation confidence Not enough data
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Genome context
chr17: 19900754-19900857 [-]

Database links

Mature dre-miR-2187-5p

Accession MIMAT0011296
Description Danio rerio dre-miR-2187-5p mature miRNA
Sequence 22 - UUAAUUAGUAUAGCCUGUUUUA - 43
Evidence experimental
454 [1]
Database links

Mature dre-miR-2187-3p

Accession MIMAT0011297
Description Danio rerio dre-miR-2187-3p mature miRNA
Sequence 61 - UUACAGGCUAUGCUAAUCUAUG - 82
Evidence experimental
454 [1]

References

  1. PubMed ID: 19397817
    Parallel DNA pyrosequencing unveils new zebrafish microRNAs
    Soares AR, Pereira PM, Santos B, Egas C, Gomes AC, Arrais J, Oliveira JL, Moura GR, Santos MA
    BMC Genomics (2009) 10:195