Stem-loop sme-mir-2f

Accession

MI0010943

Description

Schmidtea mediterranea sme-mir-2f precursor miRNA

Sequence

ggcaAUCUGAAGCUGGAUGUGUUAUgaagcuuuuuuaucaUAUCACAGCCAUGCUACAGAGUU
.....((((.((((((.((((.(((((..........))))).)))).))).))).))))...

Structure

ggcaA    A   -   A    U     agcu 
     UCUG AGC UGG UGUG UAUga    u
     |||| ||| ||| |||| |||||     
     AGAC UCG ACC ACAC AUacu    u
--UUG    A   U   G    U     auuu 

Annotation confidence Not enough data

Genome context

Contig272: 56513-56575 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from sme-mir-2f

Mature sme-miR-2f-5p

• Accession: MIMAT0011410
• Description: Schmidtea mediterranea sme-miR-2f-5p mature miRNA
• Sequence: 5 - AUCUGAAGCUGGAUGUGUUAU - 25
• Evidence: experimental ; Illumina [1]

Mature sme-miR-2f-3p

• Accession: MIMAT0011411
• Description: Schmidtea mediterranea sme-miR-2f-3p mature miRNA
• Sequence: 41 - UAUCACAGCCAUGCUACAGAGUU - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19553344
   Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
   "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
   "RNA (2009) 15:1483-1491