Stem-loop sme-mir-2202

Accession

MI0010949

Description

Schmidtea mediterranea sme-mir-2202 precursor miRNA

Sequence

uaaguuggauuugauaUGCGCAAAAAGAAUAUUAAUCGAcuuuguuaauguucacucGAUUAAUUUCCUUUUACGCUUAuuaaucaacu
..((((((..((((((.(((.((((.(((.(((((((((...((........)).)))))))))))).)))).))).))))))))))))

Structure

ua      au      U   C    A   U         cuu  uua 
  aguugg  uugaua GCG AAAA GAA AUUAAUCGA   ug   a
  ||||||  |||||| ||| |||| ||| |||||||||   ||    
  ucaacu  aauuAU CGC UUUU CUU UAAUUAGcu   ac   u
--      --      U   A    C   -         --c  uug 

Annotation confidence Not enough data

Genome context

Contig28205: 2579-2667 [-]

Mature sme-miR-2202-5p

• Accession: MIMAT0011417
• Description: Schmidtea mediterranea sme-miR-2202-5p mature miRNA
• Sequence: 17 - UGCGCAAAAAGAAUAUUAAUCGA - 39
• Evidence: experimental ; Illumina [1]

Mature sme-miR-2202-3p

• Accession: MIMAT0011418
• Description: Schmidtea mediterranea sme-miR-2202-3p mature miRNA
• Sequence: 58 - GAUUAAUUUCCUUUUACGCUUA - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19553344
   Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
   "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
   "RNA (2009) 15:1483-1491