miRBase entry: cel-mir-2208b

Stem-loop cel-mir-2208b


Accession
MI0010957
Description
Caenorhabditis elegans cel-mir-2208b precursor miRNA
Gene family
MIPF0000772; mir-2208

Literature search
1 open access papers mention cel-mir-2208b
(2 sentences)

Sequence

557 reads, 4 reads per million, 11 experiments
AAGUGUACCCGGAUCUGAUAUCCuaucaccaaaaagaggAUGCAGAUUUUGGUACACUUCA
(((((((((.(((((((.((((((............))))))))))))).)))))))))..

Structure
--         C       A      aucac 
  AAGUGUACC GGAUCUG UAUCCu     c
  ||||||||| ||||||| ||||||      
  UUCACAUGG UUUAGAC GUAgga     a
AC         U       -      gaaaa 


Annotation confidence High
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Genome context
chrIV: 1026580-1026640 [+]
Clustered miRNAs
4 other miRNAs are < 10 kb from cel-mir-2208b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cel-miR-2208b-5p

Accession MIMAT0011429
Description Caenorhabditis elegans cel-miR-2208b-5p mature miRNA
Sequence 1 - AAGUGUACCCGGAUCUGAUAUCC - 23
Evidence experimental
Illumina [1]
Database links
Predicted targets

Mature cel-miR-2208b-3p

Accession MIMAT0011430
Description Caenorhabditis elegans cel-miR-2208b-3p mature miRNA
Sequence 40 - AUGCAGAUUUUGGUACACUUCA - 61
Evidence experimental
Illumina [1]
Database links
Predicted targets

References

  1. PubMed ID: 19460142
    Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development
    Kato M, de Lencastre A, Pincus Z, Slack FJ
    Genome Biol (2009) 10:R54