miRBase entry: cel-mir-2209a

Stem-loop cel-mir-2209a


Accession
MI0010958
Description
Caenorhabditis elegans cel-mir-2209a precursor miRNA
Gene family
MIPF0000787; mir-2209

Literature search
2 open access papers mention cel-mir-2209a
(2 sentences)

Sequence

5331 reads, 45 reads per million, 15 experiments
GAGUGUAACCACUCUUCUCCUUCcgaguauugauuaucgagaAGAGAUCAGCGGUUACACUACA
.(((((((((.((..((((.((((((..........))).)))))))..)).)))))))))...

Structure
--G         A  CU    C   -   guau 
   AGUGUAACC CU  UCUC UUC cga    u
   ||||||||| ||  |||| ||| |||     
   UCACAUUGG GA  AGAG Aag gcu    g
ACA         C  CU    -   a   auua 


Annotation confidence Not enough data
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Genome context
chrIV: 1027101-1027164 [+]
Clustered miRNAs
4 other miRNAs are < 10 kb from cel-mir-2209a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cel-miR-2209a-5p

Accession MIMAT0011431
Description Caenorhabditis elegans cel-miR-2209a-5p mature miRNA
Sequence 1 - GAGUGUAACCACUCUUCUCCUUC - 23
Evidence experimental
Illumina [1]

Mature cel-miR-2209a-3p

Accession MIMAT0011432
Description Caenorhabditis elegans cel-miR-2209a-3p mature miRNA
Sequence 43 - AGAGAUCAGCGGUUACACUACA - 64
Evidence experimental
Illumina [1]
Database links
Predicted targets

References

  1. PubMed ID: 19460142
    Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development
    Kato M, de Lencastre A, Pincus Z, Slack FJ
    Genome Biol (2009) 10:R54