miRBase entry: bta-mir-1343

Stem-loop bta-mir-1343


Accession
MI0011338
Description
Bos taurus bta-mir-1343 precursor miRNA
Gene family
MIPF0001206; mir-1343

Literature search
2 open access papers mention bta-mir-1343
(5 sentences)

Sequence

1008 reads, 32 reads per million, 68 experiments
ggcuucggugcUGGGGAGCGGCCCCCGGGCGGGccucugcucuggcccCUCCUGGGGCCCGCACUCUCgcuccgggcc
((((.(((.((.((((.((((.(((((((.(((((........)))))..))))))).)))).)))).)).)))))))

Structure
    u   u  U    A    C       -C     ucu 
ggcu cgg gc GGGG GCGG CCCCGGG  GGGcc   g
|||| ||| || |||| |||| |||||||  |||||    
ccgg gcc cg UCUC CGCC GGGGUCC  cccgg   c
    -   u  C    A    C       UC     ucu 


Annotation confidence Not enough data
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Genome context
chr15: 66591432-66591509 [+]

Database links

Mature bta-miR-1343-5p

Accession MIMAT0011839
Description Bos taurus bta-miR-1343-5p mature miRNA
Sequence 12 - UGGGGAGCGGCCCCCGGGCGGG - 33
Evidence experimental
Illumina [1-2]

Mature bta-miR-1343-3p

Accession MIMAT0011840
Description Bos taurus bta-miR-1343-3p mature miRNA
Sequence 49 - CUCCUGGGGCCCGCACUCUC - 68
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 19633723
    Repertoire of bovine miRNA and miRNA-like small regulatory RNAs expressed upon viral infection
    Glazov EA, Kongsuwan K, Assavalapsakul W, Horwood PF, Mitter N, Mahony TJ
    PLoS One (2009) 4:e6349

  2. PubMed ID: 21912509
    Solexa sequencing of novel and differentially expressed microRNAs in testicular and ovarian tissues in Holstein cattle
    "Huang J, Ju Z, Li Q, Hou Q, Wang C, Li J, Li R, Wang L, Sun T, Hang S, Gao Y, Hou M, Zhong J"
    "Int J Biol Sci (2011) 7:1016-1026