miRBase entry: 19633723

Repertoire of bovine miRNA and miRNA-like small regulatory RNAs expressed upon viral infection

PubMed ID 19633723
Authors Glazov EA, Kongsuwan K, Assavalapsakul W, Horwood PF, Mitter N, Mahony TJ
Journal PLoS One
Volume 4
Pages e6349

There are 290 miRNAs associated with this paper:
Name Accession RPM Chromosome Start End Strand Confidence
bta-mir-27a MI0004746 1180 7 11838877 11838954 + High
bta-mir-30b MI0004761 888 14 7045567 7045654 + High
bta-mir-193a MI0005014 276 19 18474461 18474541 - High
bta-mir-345 MI0005019 139 21 65217711 65217801 + High
bta-mir-423 MI0005046 2314 19 21238007 21238100 + High
bta-mir-23b MI0005066 1056 8 81617032 81617091 + High
bta-mir-365-1 MI0005465 154 25 13253584 13253670 + High
bta-mir-2284i MI0011294 130 1 4288068 4288144 + High
bta-mir-2286 MI0011295 0 1 51788401 51788474 - Low
bta-mir-2287 MI0011296 1 1 72959121 72959194 - -
bta-mir-2288 MI0011297 0 1 137823482 137823558 - -
bta-mir-2289 MI0011298 3 1 146319945 146320018 - -
bta-mir-2285a MI0011299 5 1 147203769 147203840 - -
bta-mir-2290 MI0011300 3 10 12743326 12743405 - -
bta-mir-2291 MI0011301 3 10 65234976 65235049 - -
bta-mir-2292 MI0011302 2 10 67073820 67073889 + -
bta-mir-2293 MI0011303 0 10 96380574 96380645 - -
bta-mir-2294 MI0011304 1 11 11327387 11327449 + -
bta-mir-2295 MI0011305 1 11 10873974 10874040 - Medium
bta-mir-2296 MI0011306 2 11 37330097 37330166 - -
bta-mir-2297 MI0011307 0 11 37367356 37367428 - -
bta-mir-2298 MI0011308 None 11 88346339 88346407 + -
bta-mir-2299 MI0011309 24 12 29635268 29635346 - High
bta-mir-2300a MI0011310 1 12 31797031 31797108 - High
bta-mir-2300b MI0011311 10 12 31797033 31797106 + High
bta-mir-2284s MI0011312 2 12 52903108 52903175 + Medium
bta-mir-2301 MI0011313 None 12 82802493 82802553 + -
bta-mir-2302 MI0011314 1 12 86644694 86644769 - -
bta-mir-2303 MI0011315 1 12 87039058 87039136 + -
bta-mir-2285d MI0011316 1 13 22617865 22617934 - -
bta-mir-2304 MI0011317 0 13 28519115 28519188 - -
bta-mir-2305 MI0011318 0 13 39538620 39538685 + -
bta-mir-2306 MI0011319 1 13 54882259 54882337 + -
bta-mir-2307 MI0011320 12 13 58954605 58954673 + -
bta-mir-2308 MI0011321 9 14 381366 381434 + High
bta-mir-2309 MI0011322 2 14 879199 879273 + -
bta-mir-2310 MI0011323 7 14 13390877 13390940 + -
bta-mir-1603 MI0011324 None 14 36050473 36050543 + -
bta-mir-2284l MI0011325 0 14 36801062 36801134 + -
bta-mir-2489 MI0011326 1 14 45940448 45940525 + -
bta-mir-2311 MI0011327 2 14 76590535 76590589 - -
bta-mir-2284j MI0011328 12 15 31451360 31451434 - -
bta-mir-2312 MI0011329 11 15 31451361 31451433 + -
bta-mir-2313 MI0011330 33 15 34091139 34091212 + High
bta-mir-2284t MI0011331 10 15 38629318 38629390 - High
bta-mir-2285b-1 MI0011332 18 15 39058438 39058509 - High
bta-mir-2314 MI0011333 17 15 39802379 39802439 - -
bta-mir-2315 MI0011334 2 15 42178557 42178636 + -
bta-mir-2284d MI0011335 37 15 42954680 42954757 - -
bta-mir-2316 MI0011336 4 15 46653532 46653606 + -
bta-mir-2317 MI0011337 1 15 51545546 51545617 - -
bta-mir-1343 MI0011338 32 15 65460271 65460348 + High
bta-mir-2318 MI0011339 19 15 77154599 77154677 + -
bta-mir-2319a MI0011340 4 15 76769275 76769349 - Medium
bta-mir-2319b MI0011341 1 15 76769277 76769347 + Medium
bta-mir-2320 MI0011342 23 16 49235905 49235979 + High
bta-mir-2284n MI0011343 6 16 76424616 76424685 - -
bta-mir-2284g MI0011344 0 17 12751401 12751471 + -
bta-mir-2321 MI0011345 None 17 41994876 41994941 + -
bta-mir-1721 MI0011346 1 17 51964223 51964288 - -
bta-mir-2322 MI0011347 1 17 51521477 51521546 + -
bta-mir-2323 MI0011348 3 17 71652925 71653000 - High
bta-mir-2324 MI0011349 None 18 1582910 1582980 - -
bta-mir-2325a MI0011350 9 18 11898319 11898393 - -
bta-mir-2326 MI0011351 0 18 11934690 11934763 - -
bta-mir-2327 MI0011352 1 18 13962100 13962169 - -
bta-mir-2328 MI0011353 5 18 39215918 39215995 + Medium
bta-mir-2329-1 MI0011354 1 18 48328423 48328488 - Medium
bta-mir-2329-2 MI0011355 1 18 48328423 48328488 + Medium
bta-mir-2330 MI0011356 5 18 55830878 55830955 - High
bta-mir-2331 MI0011357 6 19 14988931 14989001 + High
bta-mir-2332 MI0011358 33 chr19 18689292 18689360 + Low
bta-mir-2333 MI0011359 1 19 18463796 18463858 - -
bta-mir-2334 MI0011360 1 19 20871847 20871918 - -
bta-mir-2335 MI0011361 3 19 22069218 22069286 + -
bta-mir-2336 MI0011362 29 19 22253976 22254051 + High
bta-mir-2337 MI0011363 None 19 23092412 23092491 + -
bta-mir-199c MI0011364 158 19 26131673 26131748 + -
bta-mir-2338 MI0011365 3 19 26664518 26664590 + -
bta-mir-2339 MI0011366 9 19 31369306 31369377 - -
bta-mir-1814a MI0011367 None 19 37777085 37777156 + -
bta-mir-2340 MI0011368 1 19 38262561 38262636 + -
bta-mir-2341 MI0011369 1 19 39452025 39452083 + -
bta-mir-2342 MI0011370 4 19 39867956 39868029 + Medium
bta-mir-2343 MI0011371 1 19 44575115 44575188 - -
bta-mir-2344 MI0011372 197 19 49803703 49803763 - -
bta-mir-2345 MI0011373 None 19 50211873 50211935 - -
bta-mir-2346 MI0011374 8 19 50907254 50907332 - High
bta-mir-2347 MI0011375 3 19 50984772 50984830 + -
bta-mir-2348 MI0011376 1 19 54038763 54038841 + -
bta-mir-2349 MI0011377 8 19 53603270 53603334 - -
bta-mir-2284p MI0011378 9 19 62858782 62858858 + -
bta-mir-2350 MI0011379 1 2 5466022 5466097 + -
bta-mir-2351 MI0011380 None 2 9689788 9689863 - -
bta-mir-2352 MI0011381 0 2 24156202 24156277 - -
bta-mir-2353 MI0011382 3 2 27581629 27581703 - -
bta-mir-2354 MI0011383 0 2 47355913 47355987 + -
bta-mir-2355 MI0011384 30 2 95400101 95400180 - Medium
bta-mir-2356 MI0011385 1 2 106011329 106011401 - -
bta-mir-2357 MI0011386 4 2 120686213 120686291 - Medium
bta-mir-2284u MI0011387 2 2 130300980 130301055 + -
bta-mir-2358 MI0011388 0 2 135236143 135236206 + -
bta-mir-2359 MI0011389 0 20 23198844 23198922 + -
bta-mir-2360 MI0011390 2 20 37041992 37042061 - -
bta-mir-2361 MI0011391 0 20 53339220 53339295 + -
bta-mir-2362 MI0011392 1 21 5504531 5504597 - -
bta-mir-2363-1 MI0011393 1 21 20746535 20746608 + -
bta-mir-2363-2 MI0011394 1 21 20746536 20746607 - -
bta-mir-2364 MI0011395 0 21 22434714 22434787 + -
bta-mir-2365 MI0011396 None 21 49839321 49839399 + -
bta-mir-2366 MI0011397 1 21 55264287 55264355 + -
bta-mir-2284f MI0011398 6 21 57156230 57156291 + High
bta-mir-2284a MI0011399 1 21 59750531 59750604 + -
bta-mir-2284k MI0011400 5 21 68444309 68444382 - Medium
bta-mir-1814b MI0011401 0 22 4954431 4954508 + -
bta-mir-2367 MI0011402 7 22 11368925 11369003 + High
bta-mir-2368 MI0011403 10 22 15254430 15254510 + High
bta-mir-2369 MI0011404 0 22 39677352 39677421 - -
bta-mir-2370 MI0011405 5 22 43198760 43198838 - High
bta-mir-2371 MI0011406 0 22 44529457 44529528 + -
bta-mir-2372 MI0011407 2 22 56057993 56058069 + -
bta-mir-2373 MI0011408 5 22 56833146 56833223 + High
bta-mir-2374 MI0011409 1 chr22 60062472 60062548 + -
bta-mir-2375 MI0011410 0 23 3280212 3280285 + -
bta-mir-2376 MI0011411 12 23 7481909 7481976 - -
bta-mir-2377 MI0011412 2 23 13087820 13087888 - -
bta-mir-2378 MI0011413 3 23 28399166 28399243 - -
bta-mir-2379 MI0011414 4 23 31022994 31023071 - -
bta-mir-2284c MI0011415 7 23 35873412 35873491 + -
bta-mir-2325b MI0011416 0 23 40105403 40105468 + -
bta-mir-2380 MI0011417 1 24 30704603 30704674 + -
bta-mir-2381 MI0011418 5 24 49273739 49273808 + High
bta-mir-2382 MI0011419 4 25 1742942 1743018 - High
bta-mir-2383 MI0011420 2 25 2992795 2992870 + -
bta-mir-2384 MI0011421 2 25 18625328 18625400 - -
bta-mir-2325c MI0011423 None 25 26423145 26423210 - -
bta-mir-2385 MI0011424 1 25 26434689 26434763 - -
bta-mir-2284v MI0011425 18 25 23374450 23374509 - -
bta-mir-2386 MI0011426 None 25 29242217 29242291 + -
bta-mir-2387 MI0011427 21 25 32930343 32930420 - High
bta-mir-2388 MI0011428 11 25 34785314 34785392 - High
bta-mir-2389 MI0011429 11 chr25 42477902 42477983 + Low
bta-mir-2390 MI0011430 0 25 40099589 40099660 + -
bta-mir-2392 MI0011432 1 26 23338826 23338896 + -
bta-mir-2393 MI0011433 0 26 25095398 25095451 + -
bta-mir-2394 MI0011434 3 26 31062315 31062382 - -
bta-mir-2395 MI0011435 3 26 37092167 37092240 - -
bta-mir-2396 MI0011436 4 26 42109615 42109683 + -
bta-mir-2285c MI0011437 6 26 46837233 46837297 - -
bta-mir-2397 MI0011438 10 26 49394362 49394435 + High
bta-mir-2398 MI0011439 5 27 19351413 19351491 - -
bta-mir-2399 MI0011440 9 27 26565754 26565831 + High
bta-mir-2400 MI0011441 16 27 33462772 33462845 - High
bta-mir-2284q MI0011442 0 27 35283194 35283258 - -
bta-mir-2401 MI0011443 1 27 40042134 40042208 + -
bta-mir-2402 MI0011444 1 28 7836588 7836655 + -
bta-mir-2403 MI0011445 9 28 15386293 15386367 + -
bta-mir-2404-1 MI0011446 8 29 1089784 1089848 + Medium
bta-mir-449d MI0011447 0 29 24963163 24963237 - -
bta-mir-2405 MI0011448 None 29 39948744 39948813 - -
bta-mir-2406 MI0011449 1 29 42245856 42245928 + Medium
bta-mir-2407 MI0011450 3 29 43424900 43424972 + -
bta-mir-2408 MI0011451 17 29 44875074 44875134 - High
bta-mir-2409 MI0011452 3 29 50449815 50449878 - -
bta-mir-2410 MI0011453 4 29 50643782 50643857 + -
bta-mir-1584 MI0011454 2 3 9764117 9764189 + Medium
bta-mir-2411 MI0011456 163 3 16269732 16269808 - Medium
bta-mir-2412 MI0011457 0 3 18808752 18808829 - -
bta-mir-2413 MI0011458 1 3 33588377 33588455 - -
bta-mir-2284m MI0011459 3 2 117477328 117477394 - -
bta-mir-2414 MI0011460 1 3 101721202 101721275 + -
bta-mir-2415 MI0011461 5 3 102340687 102340753 + Medium
bta-mir-2416 MI0011462 4 3 106655124 106655205 - -
bta-mir-2417 MI0011463 3 4 50043282 50043356 - Medium
bta-mir-2418 MI0011464 1 4 49026831 49026906 - -
bta-mir-2284b MI0011465 1 4 47094216 47094286 - Medium
bta-mir-1814c MI0011466 5 4 63059199 63059273 + -
bta-mir-2419 MI0011467 86 4 65945870 65945945 - High
bta-mir-2420 MI0011468 None 4 76017461 76017538 - -
bta-mir-2421 MI0011469 None 4 78452713 78452790 - -
bta-mir-2422 MI0011470 39 4 92808114 92808181 + Medium
bta-mir-1843 MI0011471 2 4 92988123 92988191 - -
bta-mir-320b MI0011472 0 4 95631850 95631921 - -
bta-mir-2423 MI0011473 None 4 97217425 97217497 + -
bta-mir-2424 MI0011474 29 chr5 104548335 104548414 - -
bta-mir-2425 MI0011475 7 5 30082250 30082330 + High
bta-mir-2426 MI0011476 3 5 30784623 30784696 + High
bta-mir-2427 MI0011477 8 5 43901773 43901847 + -
bta-mir-2428 MI0011478 3 5 41732851 41732915 + -
bta-mir-2429 MI0011479 0 5 48722183 48722257 - -
bta-mir-2430 MI0011480 1 5 55964466 55964538 - -
bta-mir-2431 MI0011481 28 5 56324073 56324140 - High
bta-mir-677 MI0011482 16 chr5 57298281 57298346 + Low
bta-mir-2432 MI0011483 2 5 57013765 57013835 - High
bta-mir-2433 MI0011484 4 5 57075606 57075682 - -
bta-mir-2434 MI0011485 None 5 64620207 64620280 - -
bta-mir-2435 MI0011486 6 5 67851858 67851927 + -
bta-mir-2436 MI0011487 7 5 83828933 83829007 - Medium
bta-mir-2284r MI0011488 5 5 101087152 101087214 - -
bta-mir-2437 MI0011490 0 5 107556526 107556586 - -
bta-mir-2438 MI0011491 0 5 109521558 109521624 + High
bta-mir-2439 MI0011492 6 5 111845858 111845935 - High
bta-mir-2440 MI0011493 14 5 110746739 110746814 - -
bta-mir-2441 MI0011494 6 5 112376908 112376977 + -
bta-mir-2442 MI0011495 1 5 113103171 113103246 - -
bta-mir-2443 MI0011496 63 5 116408665 116408737 + Medium
bta-mir-2284h MI0011497 249 5 117234123 117234189 + High
bta-mir-2444 MI0011498 0 6 14285755 14285829 - -
bta-mir-2446 MI0011500 9 6 98196381 98196451 - -
bta-mir-2447 MI0011501 16 6 97814598 97814674 - High
bta-mir-2448 MI0011502 16 6 110754790 110754862 - High
bta-mir-2449 MI0011503 4 6 117380992 117381063 - -
bta-mir-2450c MI0011504 0 6 115668470 115668541 - -
bta-mir-2450b MI0011505 3 6 115667827 115667899 - -
bta-mir-2450a MI0011506 54 6 115667557 115667629 - -
bta-mir-2451 MI0011507 1 6 115603194 115603260 - -
bta-mir-1777a MI0011508 4 6 115360871 115360946 - -
bta-mir-2452 MI0011509 None 6 114027966 114028043 + -
bta-mir-2453 MI0011510 4 6 113521279 113521357 + High
bta-mir-2454 MI0011511 13 7 14691369 14691440 - High
bta-mir-2455 MI0011512 2 7 16711356 16711431 - Medium
bta-mir-339b MI0011513 170 7 17148728 17148785 - -
bta-mir-1434 MI0011514 29 7 20030713 20030785 + Low
bta-mir-2456 MI0011515 1 7 20047255 20047326 + -
bta-mir-2457 MI0011516 8 7 22129921 22129991 - Medium
bta-mir-2458 MI0011517 1 7 27420509 27420575 - -
bta-mir-2459 MI0011518 10 7 49737453 49737522 + -
bta-mir-2460 MI0011519 7 7 53640794 53640861 - High
bta-mir-1777b MI0011520 2 7 61503046 61503125 - -
bta-mir-2461 MI0011521 2 7 61885747 61885828 + -
bta-mir-2462 MI0011522 1 7 80356568 80356636 + -
bta-mir-2463 MI0011523 5 7 82924733 82924803 - -
bta-mir-2464 MI0011524 2 7 90391797 90391866 + Medium
bta-mir-2465 MI0011525 3 7 107506093 107506172 - -
bta-mir-2466 MI0011526 4 8 1050879 1050936 + High
bta-mir-2467 MI0011527 3 8 1310564 1310642 - -
bta-mir-2468 MI0011528 12 8 5823335 5823407 + High
bta-mir-2469 MI0011529 3 8 11522207 11522273 - -
bta-mir-2470 MI0011530 None 8 40620793 40620866 + -
bta-mir-2471 MI0011531 1 8 40311803 40311872 + -
bta-mir-2472 MI0011532 1 8 62092929 62092999 - -
bta-mir-2473 MI0011533 4 8 62108920 62108991 - -
bta-mir-2474 MI0011534 6 8 62142389 62142447 - -
bta-mir-2404-2 MI0011535 7 8 73407097 73407163 - Medium
bta-mir-2475 MI0011536 8 8 81616371 81616441 + High
bta-mir-2284o MI0011538 0 9 25151060 25151120 + -
bta-mir-2477 MI0011539 42 9 25978526 25978597 + -
bta-mir-2478 MI0011540 207 9 27675568 27675644 - -
bta-mir-2479 MI0011541 0 9 37041903 37041975 + -
bta-mir-2480 MI0011542 0 9 90022253 90022320 - -
bta-mir-2481 MI0011543 0 9 93861528 93861591 + -
bta-mir-2482 MI0011544 None 9 98171974 98172050 - -
bta-mir-2483 MI0011545 23 X 9571631 9571710 - High
bta-mir-2484 MI0011546 23 gb|NKLS02002208.1| 8050943 8051018 + -
bta-mir-664a MI0011547 6 X 36217419 36217500 - Medium
bta-mir-2485 MI0011548 0 X 37176088 37176149 - -
bta-mir-2284e MI0011549 2 X 56765831 56765894 - Medium
bta-mir-2486 MI0011550 1 X 87203423 87203501 - -
bta-mir-2488 MI0011552 None X 104524588 104524660 + -
bta-let-7f-2 MI0004734 15341 X 90986550 90986632 - High
bta-mir-21 MI0004742 17881 19 10803472 10803543 + High
bta-mir-320a-2 MI0004748 926 20 15245796 15245877 + High
bta-mir-140 MI0005010 2906 18 36962013 36962106 + High
bta-mir-218-2 MI0005017 52 20 554570 554631 - Medium
bta-let-7d MI0005026 807 8 85452957 85453043 + High
bta-let-7g MI0005051 2040 22 48636407 48636489 + High
bta-let-7a-1 MI0005057 11865 8 85450397 85450476 + High
bta-let-7f-1 MI0005062 15133 8 85450750 85450836 + High
bta-let-7i MI0005065 3806 5 50983054 50983137 - High
bta-let-7a-2 MI0005451 11827 15 32812703 32812774 - High
bta-let-7a-3 MI0005452 11878 5 116408410 116408483 + High
bta-let-7b MI0005453 4232 5 116409210 116409290 + High
bta-let-7c MI0005454 1399 1 20434617 20434700 - High
bta-let-7e MI0005455 535 18 57689058 57689136 + High
bta-mir-194a-2 MI0009765 4433 29 43114571 43114653 - High
bta-mir-218-1 MI0009780 65 6 40087130 40087239 + Medium
bta-mir-219-1 MI0009781 3 11 98985275 98985370 - High
bta-mir-338 MI0009805 105 19 51569617 51569708 + High
bta-mir-365-2 MI0009812 137 19 18461502 18461612 - High
bta-mir-451 MI0009837 80 19 20238525 20238595 - High
bta-mir-877 MI0009903 49 23 28399539 28399640 - High
bta-mir-1468 MI0012207 580 X 96454651 96454747 + High
bta-mir-194a-1 MI0012208 5679 16 23607933 23608029 - High
bta-mir-320a-1 MI0012211 926 8 69558096 69558177 - High
bta-mir-1277 MI0021114 32 X 2569960 2570037 + High
bta-mir-219-2 MI0025539 13 23 7394820 7394882 + High
bta-mir-1842 MI0031498 47 25 1742695 1742754 - High
bta-mir-219b MI0032929 20 11 98985277 98985364 + High
bta-mir-194b-1 MI0032935 20 16 23607939 23608023 + Medium
bta-mir-194b-2 MI0038456 12 29 43114587 43114639 + Medium



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