miRBase entry: bta-mir-2475

Stem-loop bta-mir-2475


Accession
MI0011536
Description
Bos taurus bta-mir-2475 precursor miRNA


Sequence

771 reads, 1.0 reads per million, 133 experiments
uguuucUCUUCAGGUUUGCCACUUCACAgagaguuuguguugcuUGAAGUGUGUGAAACUGCAGCGGugca
(((.((.((.(((..(((((((((((.((.((.......)).))))))))).))))..))).)).)).)))

Structure
   u  U  U   GU    -       C  a  gu 
ugu uc CU CAG  UUGC CACUUCA Ag ga  u
||| || || |||  |||| ||||||| || ||  u
acg GG GA GUC  AGUG GUGAAGU uc uu  g
   u  C  C   AA    U       -  g  gu 


Annotation confidence High
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Genome context
8: 81616371-81616441 [+]
Clustered miRNAs
4 other miRNAs are < 10 kb from bta-mir-2475
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-2475-5p

Accession MIMAT0050953
Description Bos taurus bta-miR-2475-5p mature miRNA
Sequence 7 - UCUUCAGGUUUGCCACUUCACA - 28
Evidence experimental
Illumina [1]

Mature bta-miR-2475-3p

Accession MIMAT0012066
Description Bos taurus bta-miR-2475-3p mature miRNA
Sequence 45 - UGAAGUGUGUGAAACUGCAGCGG - 67
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 19633723
    Repertoire of bovine miRNA and miRNA-like small regulatory RNAs expressed upon viral infection
    Glazov EA, Kongsuwan K, Assavalapsakul W, Horwood PF, Mitter N, Mahony TJ
    PLoS One (2009) 4:e6349