Stem-loop bta-mir-193a

Accession

MI0005014

Description

Bos taurus bta-mir-193a precursor miRNA

Literature search

12 open access papers mention bta-mir-193a
(49 sentences)

Sequence

14275 reads, 276 reads per million, 71 experiments

ugggagcugagagcUGGGUCUUUGCGGGCGAGAUGAaggugucgguucAACUGGCCUACAAAGUCCCAGUccucggccccc
.(((.((((((.((((((.(((((.((((.((.((((........)))).)).)))).))))).)))))).))))))))).

Structure

u   a      a      U     C    G  A    ggu 
 ggg gcugag gcUGGG CUUUG GGGC AG UGAa   g
 ||| |||||| |||||| ||||| |||| || ||||    
 ccc cggcuc UGACCC GAAAC UCCG UC Acuu   u
c   -      c      U     A    G  A    ggc 

Annotation confidence High

Comments

High-throughput sequencing suggests that the dominant miRNA arises from the 5' arm of this precursor [2], in contrast to earlier cloning studies.

Genome context

chr19: 18931346-18931426 [-]

Mature bta-miR-193a-5p

• Accession: MIMAT0003794
• Description: Bos taurus bta-miR-193a-5p mature miRNA
• Sequence: 15 - UGGGUCUUUGCGGGCGAGAUGA - 36
• Evidence: experimental ; cloned [1], Illumina [2]

Mature bta-miR-193a-3p

• Accession: MIMAT0003795
• Description: Bos taurus bta-miR-193a-3p mature miRNA
• Sequence: 49 - AACUGGCCUACAAAGUCCCAGU - 70
• Evidence: experimental ; cloned [1], Illumina [2]

References

1. PubMed ID: 17105755
   Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
   "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
   "Physiol Genomics (2007) 29:35-43


2. PubMed ID: 19633723
   Repertoire of bovine miRNA and miRNA-like small regulatory RNAs expressed upon viral infection
   Glazov EA, Kongsuwan K, Assavalapsakul W, Horwood PF, Mitter N, Mahony TJ
   PLoS One (2009) 4:e6349