Stem-loop bta-mir-199c

Accession

MI0011364

Description

Bos taurus bta-mir-199c precursor miRNA

Literature search

6 open access papers mention bta-mir-199c
(20 sentences)

Sequence

19014 reads, 108 reads per million, 66 experiments

aucagugguucuuacgguguguuugcuacuauugaaacgucagugUACAGUAGUCUGCACAUUGGcuucuugugau
((((..((......((((((((..(((((((((((....)))))....))))))..))))))))....))..))))

Structure

    gu  uucuua        uu      ----     a 
auca  gg      cggugugu  gcuacu    auuga a
||||  ||      ||||||||  ||||||    |||||  
uagu  uc      GUUACACG  UGAUGA    ugacu c
    gu  --uucG        UC      CAUg     g 

Annotation confidence Not enough data

Genome context

chr19: 26881087-26881162 [+]

Mature bta-miR-199c

• Accession: MIMAT0011871
• Description: Bos taurus bta-miR-199c mature miRNA
• Sequence: 46 - UACAGUAGUCUGCACAUUGG - 65
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 19633723
   Repertoire of bovine miRNA and miRNA-like small regulatory RNAs expressed upon viral infection
   Glazov EA, Kongsuwan K, Assavalapsakul W, Horwood PF, Mitter N, Mahony TJ
   PLoS One (2009) 4:e6349


2. PubMed ID: 21912509
   Solexa sequencing of novel and differentially expressed microRNAs in testicular and ovarian tissues in Holstein cattle
   "Huang J, Ju Z, Li Q, Hou Q, Wang C, Li J, Li R, Wang L, Sun T, Hang S, Gao Y, Hou M, Zhong J"
   "Int J Biol Sci (2011) 7:1016-1026