miRBase entry: bta-mir-2284h

Stem-loop bta-mir-2284h


Accession
MI0011497
Description
Bos taurus bta-mir-2284h precursor miRNA
Gene family
MIPF0000747; mir-2284

Literature search
13 open access papers mention bta-mir-2284h
(32 sentences)

Sequence

4655 reads, 249 reads per million, 59 experiments
guuggCCCAAAAGUUCGUUCGGGUUUccuguaugugacggaaaaACCCCAAUGAGCUUUUGACCaac
(((((..((((((((((((.((((((.((((.....))))..)))))).)))))))))))).)))))

Structure
     CC            C      -c    a 
guugg  CAAAAGUUCGUU GGGUUU  cugu u
|||||  |||||||||||| ||||||  |||| g
caaCC  GUUUUCGAGUAA CCCAaa  ggca u
     -A            C      aa    g 


Annotation confidence Not enough data
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Genome context
chr5: 118691017-118691083 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from bta-mir-2284h
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-2284h-5p

Accession MIMAT0012019
Description Bos taurus bta-miR-2284h-5p mature miRNA
Sequence 6 - CCCAAAAGUUCGUUCGGGUUU - 26
Evidence experimental
Illumina [1]

Mature bta-miR-2284h-3p

Accession MIMAT0012020
Description Bos taurus bta-miR-2284h-3p mature miRNA
Sequence 45 - ACCCCAAUGAGCUUUUGACC - 64
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 19633723
    Repertoire of bovine miRNA and miRNA-like small regulatory RNAs expressed upon viral infection
    Glazov EA, Kongsuwan K, Assavalapsakul W, Horwood PF, Mitter N, Mahony TJ
    PLoS One (2009) 4:e6349