Stem-loop bta-mir-1842

Accession

MI0031498

Description

Bos taurus bta-mir-1842 precursor miRNA mir-1842

Gene
family

RF03357; mir-1842

Literature search

2 open access papers mention bta-mir-1842
(2 sentences)

Sequence

8230 reads, 7.0 reads per million, 315 experiments

UGGCUCUGUGAGGUCGGCUCAaggugggucuggauguugAGCAGGCCUGUCAGGGCGUUG
..((((((..(((((.((((((.((........)).)))))).)))))..))))))....

Structure

--UG      UG     G      g  ggg 
    GCUCUG  AGGUC GCUCAa gu   u
    ||||||  ||||| |||||| ||    
    CGGGAC  UCCGG CGAguu ua   c
GUUG      UG     A      g  ggu 

Annotation confidence High

Genome context

25: 1742695-1742754 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from bta-mir-1842

Mature bta-miR-1842-5p

• Accession: MIMAT0036969
• Description: Bos taurus bta-miR-1842-5p mature miRNA
• Sequence: 1 - UGGCUCUGUGAGGUCGGCUCA - 21
• Evidence: experimental ; Illumina [1]

Mature bta-miR-1842-3p

• Accession: MIMAT0051063
• Description: Bos taurus bta-miR-1842-3p mature miRNA
• Sequence: 40 - AGCAGGCCUGUCAGGGCGUUG - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24021155
   Profiling microRNA expression in bovine alveolar macrophages using RNA-seq
   "Vegh P, Foroushani AB, Magee DA, McCabe MS, Browne JA, Nalpas NC, Conlon KM, Gordon SV, Bradley DG, MacHugh DE, Lynn DJ"
   "Vet Immunol Immunopathol (2013) 155:238-244