Stem-loop bta-let-7f-1

Accession

MI0005062

Description

Bos taurus bta-let-7f-1 precursor miRNA

Literature search

71 open access papers mention bta-let-7f-1
(261 sentences)

Sequence

48877684 reads, 16573.0 reads per million, 321 experiments

ucagagUGAGGUAGUAGAUUGUAUAGUUgugggguagugauuuuacccuguucaggagauaaCUAUACAAUCUAUUGCCUUCCcuga
((((.(.((((((((((((((((((((((((((((((.....))))))).........))))))))))))))))))))))).)))))

Structure

    a U                       ---------       u 
ucag g GAGGUAGUAGAUUGUAUAGUUgu         gggguag g
|||| | |||||||||||||||||||||||         ||||||| a
aguc C UUCCGUUAUCUAACAUAUCaaua         ucccauu u
    - C                       gaggacuug       u 

Annotation confidence High

Genome context

8: 85450750-85450836 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from bta-let-7f-1

Mature bta-let-7f-5p

• Accession: MIMAT0003519
• Description: Bos taurus bta-let-7f-5p mature miRNA
• Sequence: 7 - UGAGGUAGUAGAUUGUAUAGUU - 28
• Evidence: experimental ; cloned [1-3]

Mature bta-let-7f-1-3p

• Accession: MIMAT0060918
• Description: Bos taurus bta-let-7f-1-3p mature miRNA
• Sequence: 63 - CUAUACAAUCUAUUGCCUUCC - 83
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 17105755
   Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
   "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
   "Physiol Genomics (2007) 29:35-43


2. PubMed ID: 17306260
   Identification and characterization of microRNAs from the bovine adipose tissue and mammary gland
   "Gu Z, Eleswarapu S, Jiang H"
   "FEBS Lett (2007) 581:981-988


3. PubMed ID: 19267191
   Identification and characteristics of cattle microRNAs by homology searching and small RNA cloning
   "Long JE, Chen HX"
   "Biochem Genet (2009) 47:329-343