Stem-loop bta-let-7d

Accession

MI0005026

Description

Bos taurus bta-let-7d precursor miRNA

Literature search

172 open access papers mention bta-let-7d
(827 sentences)

Sequence

1798308 reads, 849.0 reads per million, 320 experiments

ccuaggaAGAGGUAGUAGGUUGCAUAGUUUucgggcagggauuuugcccacaaggagguaaCUAUACGACCUGCUGCCUUUCUuagg
(((((((.((((((((((((((.((((((.((((((((.....)))))).......)).)))))).)))))))))))))))))))))

Structure

       A              C      U  -------      g 
ccuagga GAGGUAGUAGGUUG AUAGUU uc       gggcag g
||||||| |||||||||||||| |||||| ||       |||||| a
ggauUCU UUCCGUCGUCCAGC UAUCaa gg       cccguu u
       -              A      u  aggaaca      u 

Annotation confidence High

Genome context

8: 85452957-85453043 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from bta-let-7d

Mature bta-let-7d-5p

• Accession: MIMAT0003810
• Description: Bos taurus bta-let-7d-5p mature miRNA
• Sequence: 8 - AGAGGUAGUAGGUUGCAUAGUUU - 30
• Evidence: experimental ; cloned [1], Array [2], qRT-PCR [2]

Mature bta-let-7e-3p

• Accession: MIMAT0060917
• Description: Bos taurus bta-let-7e-3p mature miRNA
• Sequence: 62 - CUAUACGACCUGCUGCCUUUCU - 83
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 17105755
   Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
   "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
   "Physiol Genomics (2007) 29:35-43


2. PubMed ID: 19170227
   Identification and expression profiling of microRNAs during bovine oocyte maturation using heterologous approach
   "Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker M"
   "Mol Reprod Dev (2009) 76:665-677