Stem-loop bta-mir-2443

Accession

MI0011496

Description

Bos taurus bta-mir-2443 precursor miRNA

Literature search

2 open access papers mention bta-mir-2443
(2 sentences)

Sequence

6616 reads, 5.0 reads per million, 286 experiments

gugaggguUGAGGGCAGGACCGUAUGAGGUGUccaaggaaggcuccaCUCAGCCGGCCCUUCCCUCCCcucac
(((((((..(((((.(((.(((..((((..(.((......))..)..))))..))).))).))))))))))))

Structure

       uU     C   A   UA    GU -U  aa 
gugaggg  GAGGG AGG CCG  UGAG  G  cc  g
|||||||  ||||| ||| |||  ||||  |  ||   
cacucCC  CUCCC UCC GGC  ACUC  c  gg  g
       --     U   C   CG    ac uc  aa 

Annotation confidence Medium

Genome context

5: 116408665-116408737 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from bta-mir-2443

Mature bta-miR-2443-5p

• Accession: MIMAT0012018
• Description: Bos taurus bta-miR-2443-5p mature miRNA
• Sequence: 9 - UGAGGGCAGGACCGUAUGAGGUGU - 32
• Evidence: experimental ; Illumina [1]

Mature bta-miR-2443-3p

• Accession: MIMAT0050946
• Description: Bos taurus bta-miR-2443-3p mature miRNA
• Sequence: 48 - CUCAGCCGGCCCUUCCCUCCC - 68
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19633723
   Repertoire of bovine miRNA and miRNA-like small regulatory RNAs expressed upon viral infection
   Glazov EA, Kongsuwan K, Assavalapsakul W, Horwood PF, Mitter N, Mahony TJ
   PLoS One (2009) 4:e6349