miRBase entry: bta-mir-2318

Stem-loop bta-mir-2318


Accession
MI0011339
Description
Bos taurus bta-mir-2318 precursor miRNA
Gene family
MIPF0001968; mir-2318

Literature search
2 open access papers mention bta-mir-2318
(2 sentences)

Sequence

332 reads, 19 reads per million, 56 experiments
ugucaggaaccccGUGUAUGAUGAAUUAUCUGACCcggccguugccucucauguaacgcuucucauggcucucacugca
((.(((((...(((((...((.(..((((.(((...(((....)))..))).))))..).)).)))))...)).)))))

Structure
  u   -  acc     UAU  U AA    C   CCc   c 
ug cag ga   ccGUG   GA G  UUAU UGA   ggc g
|| ||| ||   |||||   || |  |||| |||   |||  
ac guc cu   gguac   cu c  aaug acu   ccg u
  -   a  cuc     --u  u gc    u   -cu   u 


Annotation confidence Not enough data
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Genome context
chr15: 78735576-78735654 [+]

Database links

Mature bta-miR-2318

Accession MIMAT0011841
Description Bos taurus bta-miR-2318 mature miRNA
Sequence 14 - GUGUAUGAUGAAUUAUCUGACC - 35
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 19633723
    Repertoire of bovine miRNA and miRNA-like small regulatory RNAs expressed upon viral infection
    Glazov EA, Kongsuwan K, Assavalapsakul W, Horwood PF, Mitter N, Mahony TJ
    PLoS One (2009) 4:e6349