miRBase entry: bta-mir-199c

Stem-loop bta-mir-199c


Accession
MI0011364
Description
Bos taurus bta-mir-199c precursor miRNA

Literature search
6 open access papers mention bta-mir-199c
(20 sentences)

Sequence

19014 reads, 158 reads per million, 66 experiments
aucagugguucuuacgguguguuugcuacuauugaaacgucagugUACAGUAGUCUGCACAUUGGcuucuugugau
((((..((......((((((((..(((((((((((....)))))....))))))..))))))))....))..))))

Structure
    gu  uucuua        uu      ----     a 
auca  gg      cggugugu  gcuacu    auuga a
||||  ||      ||||||||  ||||||    |||||  
uagu  uc      GUUACACG  UGAUGA    ugacu c
    gu  --uucG        UC      CAUg     g 


Annotation confidence Not enough data
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Genome context
chr19: 26881087-26881162 [+]

Database links

Mature bta-miR-199c

Accession MIMAT0011871
Description Bos taurus bta-miR-199c mature miRNA
Sequence 46 - UACAGUAGUCUGCACAUUGG - 65
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 19633723
    Repertoire of bovine miRNA and miRNA-like small regulatory RNAs expressed upon viral infection
    Glazov EA, Kongsuwan K, Assavalapsakul W, Horwood PF, Mitter N, Mahony TJ
    PLoS One (2009) 4:e6349

  2. PubMed ID: 21912509
    Solexa sequencing of novel and differentially expressed microRNAs in testicular and ovarian tissues in Holstein cattle
    "Huang J, Ju Z, Li Q, Hou Q, Wang C, Li J, Li R, Wang L, Sun T, Hang S, Gao Y, Hou M, Zhong J"
    "Int J Biol Sci (2011) 7:1016-1026