Stem-loop sequence bta-mir-2450a

Accession

MI0011506 (change log)

Description

Bos taurus miR-2450a stem-loop

Gene family

MIPF0000758; mir-2450

Literature search

1 open access papers mention bta-mir-2450a
(1 sentences)

Stem-loop

              ug     u    a  cu  -  aua 
5' agaggcgcgug  ccuuu cugc ca  ug gu   g
   |||||||||||  ||||| |||| ||  || ||    
3' uuuccguguac  ggaga gacg gu  ac cg   a
              gu     u    g  ac  a  cuc 

Deep sequencing

679 reads, 0 reads per million, 19 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chr6: 108173591-108173663 [-]
• Overlapping transcripts:

  sense

  ENSBTAT00000001972 ; HTT-201; intron 21

Clustered miRNAs

< 10kb from bta-mir-2450a

• bta-mir-2450c: chr6: 108174504-108174575 [-]
• bta-mir-2450d: chr6: 108173970-108174042 [-]
• bta-mir-2450b: chr6: 108173861-108173933 [-]
• bta-mir-2450a: chr6: 108173591-108173663 [-]

Database links

• EntrezGene:MIR2450A
• RNAcentral:URS000075A28E_9913
• miRBase Tracker:MI0011506

Mature sequence bta-miR-2450a

• Accession: MIMAT0012030
• Sequence: 48 - ugggcaguagaggugcaugug - 68
• Deep sequencing: 678 reads, 19 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:bta-miR-2450a

References

1. PMID:19633723 "Repertoire of bovine miRNA and miRNA-like small regulatory RNAs expressed upon viral infection" Glazov EA, Kongsuwan K, Assavalapsakul W, Horwood PF, Mitter N, Mahony TJ PLoS One. 4:e6349(2009).