Stem-loop sequence bta-mir-664a

Accession

MI0011547 (change log)

Previous IDs

bta-mir-664

Description

Bos taurus miR-664 stem-loop

Gene family

MIPF0000300; mir-664

Literature search

3 open access papers mention bta-mir-664a
(3 sentences)

Stem-loop

      a   uaaaacac         u   ug         ac 
5' ggg cau        aggcugggg gug  uggauggag  u
   ||| |||        ||||||||| |||  |||||||||  g
3' ucc gua        uccgauccc cau  gcuuaucuc  u
      -   --uagacc         u   uu         au 

Deep sequencing

26 reads, 0 reads per million, 12 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chrX: 39531384-39531465 [-]
• Overlapping transcripts:

  sense

  ENSBTAT00000060339 ; SNORA36-201; exon 1

  ENSBTAT00000017339 ; DKC1-201; intron 8

Database links

• EntrezGene:MIR664
• miRBase Tracker:MI0011547

Mature sequence bta-miR-664a

• Accession: MIMAT0012078
• Previous IDs: bta-miR-664
• Sequence: 15 - caggcugggguguguguggaug - 36
• Deep sequencing: 16 reads, 5 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:bta-miR-664a

References

1. PMID:19633723 "Repertoire of bovine miRNA and miRNA-like small regulatory RNAs expressed upon viral infection" Glazov EA, Kongsuwan K, Assavalapsakul W, Horwood PF, Mitter N, Mahony TJ PLoS One. 4:e6349(2009).