Stem-loop sequence dme-mir-2494

Accession

MI0011583 (change log)

Description

Drosophila melanogaster miR-2494 stem-loop

Gene family

MIPF0000975; mir-2494

Literature search

2 open access papers mention dme-mir-2494
(2 sentences)

Stem-loop

          -         c -a  --a       c  cag          accuucaaaa 
5' uccaucu uccgaccgg g  uc   guaagug ac   auugggaaua          g
   ||||||| ||||||||| |  ||   ||||||| ||   ||||||||||          c
3' agguggg agguugguc c  ag   cauucac ug   ugacccuuau          u
          u         c cg  gaa       c  uaa          aaauucaacg 

Deep sequencing

800 reads, 17.1 reads per million, 35 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Release_6; GCA_000001215.4): chr3R: 16618766-16618882 [+]
• Overlapping transcripts:

  sense

  FBtr0083330 ; CG17560-RA; 3'UTR (exon 4)

Database links

• RNAcentral:URS00006757F7_7227
• miRBase Tracker:MI0011583

Mature sequence dme-miR-2494-5p

• Accession: MIMAT0012202
• Previous IDs: dme-miR-2494*
• Sequence: 23 - guaagugcaccagauugggaa - 43
• Deep sequencing: 34 reads, 16 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS000013B64A_7227
• Predicted targets:
  • microrna.org:dme-miR-2494-5p

Mature sequence dme-miR-2494-3p

• Accession: MIMAT0012203
• Previous IDs: dme-miR-2494
• Sequence: 71 - uucccaguaauguccacuuacaag - 94
• Deep sequencing: 747 reads, 29 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS00003D495E_7227
• Predicted targets:
  • microrna.org:dme-miR-2494-3p

References

1. PMID:20037610 "Evolutionary flux of canonical microRNAs and mirtrons in Drosophila" Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC Nat Genet. 42:6-9(2010).