Stem-loop mtr-MIR2591

Accession

MI0011814

Description

Medicago truncatula mtr-MIR2591 precursor miRNA

Sequence

aagGGAACUUCUACGGUACACCUGCaaauuaagguguaucgguacucuuacuucaaaaauuuauaaauuaacuaucauuuuuaugaaauaaaaagcuauuuguugauaucuauauuuuagaaaauaucauuucauaagaaaaaaagcaucauuucauuguuuauaaaaaucauacuaauuuuuuuagauuuauuguaaaaaauaaucaaaauucucuauuacgaguacuaaaaauucagaaaaaucaaauuuuauuucgucgauguuuuugauaaauaagauuuaauuauuauaauuauaggugauagaaaacaauuuuucucuuuaaaaaauaacacauuuaacuacuaauuuaaugauuuaguguaccaauacacucauaucuuuggguguaccauagaauuuuccua
.((((((.(((((.(((((((((.........(((((((.(((((.((........(((((..(((((((.......((((((((((((....(((.....)))((((((((.....))))...))))))))))))))))...(((((.........)))))............((((.....))))..(((((......))))).........((((((((((((.......)))).....(((.(((((((((((.(((((.....)))))))))))))))).))).............)))))))).....((((((.......))))))...............)))))))..))))))).))))).))))))).........))))))))).))))).)))))).

Structure

a      C     C         GCaaauuaa       c     u  uacuucaa     ua       acuaucauuuuuaugaaauaaaaagcuauuuguugauaucuauauuuuagaaaauaucauuucauaagaaaaaaagcaucauuucauuguuuauaaaaaucauacuaauuuuuuuagauuuauuguaaaaaauaaucaaaauuc        gaguacuaaaaauucagaaa   c           c     u 
 agGGAA UUCUA GGUACACCU         gguguau gguac cu        aaauu  uaaauua                                                                                                                                                ucuauuac                    aau aaauuuuauuu gucga g
 |||||| ||||| |||||||||         ||||||| ||||| ||        |||||  |||||||                                                                                                                                                ||||||||                    ||| ||||||||||| ||||| u
 uccuuu aagau ccauguggg         ucacaua ccaug ga        uuuag  auuuaau                                                                                                                                                agauagug                    uua uuuagaauaaa uaguu u
a      u     a         uuucuauac       a     u  --------     ua       ---------------------------------------------------------------------------------------------------------caucaauuuacacaauaaaaaauuucucuuuuuaacaaa        -------gauauuaauauua   a           -     u 

Annotation confidence Not enough data

Genome context

chr5: 14541103-14541512 [-]

Mature mtr-miR2591

• Accession: MIMAT0013267
• Description: Medicago truncatula mtr-miR2591 mature miRNA
• Sequence: 4 - GGAACUUCUACGGUACACCUGC - 25
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796